Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUEDC1Q9NWM3 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.58■■□□□ 1.53
CUEDC1Q9NWM3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CUEDC1Q9NWM3 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CUEDC1Q9NWM3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC24.58■■□□□ 1.52
CUEDC1Q9NWM3 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.57■■□□□ 1.52
CUEDC1Q9NWM3 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC24.57■■□□□ 1.52
CUEDC1Q9NWM3 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CUEDC1Q9NWM3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CUEDC1Q9NWM3 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.56■■□□□ 1.52
CUEDC1Q9NWM3 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.56■■□□□ 1.52
CUEDC1Q9NWM3 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CUEDC1Q9NWM3 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CUEDC1Q9NWM3 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.54■■□□□ 1.52
CUEDC1Q9NWM3 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CUEDC1Q9NWM3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L13-201ENST00000554103 1267 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L15-201ENST00000611059 1267 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L23-201ENST00000615195 1269 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L24-201ENST00000617576 1269 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L22-201ENST00000618238 1269 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L20-201ENST00000619712 1269 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L21-201ENST00000622058 1269 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L10-201ENST00000622460 1267 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 DUX4L25-201ENST00000624915 1269 ntBASIC24.53■■□□□ 1.52
CUEDC1Q9NWM3 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CUEDC1Q9NWM3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CUEDC1Q9NWM3 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CUEDC1Q9NWM3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CUEDC1Q9NWM3 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CUEDC1Q9NWM3 AC110285.7-201ENST00000624417 1536 ntBASIC24.51■■□□□ 1.51
CUEDC1Q9NWM3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CUEDC1Q9NWM3 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.5■■□□□ 1.51
CUEDC1Q9NWM3 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
CUEDC1Q9NWM3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24.49■■□□□ 1.51
CUEDC1Q9NWM3 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.49■■□□□ 1.51
CUEDC1Q9NWM3 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
CUEDC1Q9NWM3 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CUEDC1Q9NWM3 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CUEDC1Q9NWM3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CUEDC1Q9NWM3 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.48■■□□□ 1.51
CUEDC1Q9NWM3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 HSD17B1P1-201ENST00000590052 955 ntBASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 CR559946.2-201ENST00000623684 991 ntBASIC24.47■■□□□ 1.51
CUEDC1Q9NWM3 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUEDC1Q9NWM3 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUEDC1Q9NWM3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.46■■□□□ 1.51
CUEDC1Q9NWM3 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24.46■■□□□ 1.51
CUEDC1Q9NWM3 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CUEDC1Q9NWM3 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CUEDC1Q9NWM3 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
CUEDC1Q9NWM3 AP002414.2-202ENST00000590929 1450 ntBASIC24.45■■□□□ 1.5
CUEDC1Q9NWM3 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
CUEDC1Q9NWM3 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.44■■□□□ 1.5
CUEDC1Q9NWM3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CUEDC1Q9NWM3 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.44■■□□□ 1.5
CUEDC1Q9NWM3 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.44■■□□□ 1.5
CUEDC1Q9NWM3 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CUEDC1Q9NWM3 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
CUEDC1Q9NWM3 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CUEDC1Q9NWM3 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.43■■□□□ 1.5
CUEDC1Q9NWM3 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.43■■□□□ 1.5
CUEDC1Q9NWM3 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CUEDC1Q9NWM3 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 MIR3648-2-201ENST00000581792 180 ntBASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 MIR3648-1-201ENST00000615959 180 ntBASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 AC142086.6-201ENST00000621154 1765 ntBASIC24.42■■□□□ 1.5
CUEDC1Q9NWM3 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 HES6-205ENST00000409356 528 ntTSL 2 BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.41■■□□□ 1.5
CUEDC1Q9NWM3 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUEDC1Q9NWM3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUEDC1Q9NWM3 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
CUEDC1Q9NWM3 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CUEDC1Q9NWM3 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
CUEDC1Q9NWM3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CUEDC1Q9NWM3 AC016575.1-201ENST00000607026 382 ntBASIC24.39■■□□□ 1.49
CUEDC1Q9NWM3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.39■■□□□ 1.49
CUEDC1Q9NWM3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CUEDC1Q9NWM3 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.39■■□□□ 1.49
CUEDC1Q9NWM3 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CUEDC1Q9NWM3 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC24.38■■□□□ 1.49
CUEDC1Q9NWM3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.38■■□□□ 1.49
CUEDC1Q9NWM3 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms