Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
UBQLN3Q9H347 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
UBQLN3Q9H347 DUX4L13-201ENST00000554103 1267 ntBASIC23.48■■□□□ 1.35
UBQLN3Q9H347 DUX4L15-201ENST00000611059 1267 ntBASIC23.48■■□□□ 1.35
UBQLN3Q9H347 DUX4L23-201ENST00000615195 1269 ntBASIC23.48■■□□□ 1.35
UBQLN3Q9H347 DUX4L24-201ENST00000617576 1269 ntBASIC23.48■■□□□ 1.35
UBQLN3Q9H347 DUX4L22-201ENST00000618238 1269 ntBASIC23.48■■□□□ 1.35
UBQLN3Q9H347 DUX4L20-201ENST00000619712 1269 ntBASIC23.48■■□□□ 1.35
UBQLN3Q9H347 DUX4L21-201ENST00000622058 1269 ntBASIC23.48■■□□□ 1.35
UBQLN3Q9H347 DUX4L10-201ENST00000622460 1267 ntBASIC23.48■■□□□ 1.35
UBQLN3Q9H347 DUX4L25-201ENST00000624915 1269 ntBASIC23.48■■□□□ 1.35
UBQLN3Q9H347 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.48■■□□□ 1.35
UBQLN3Q9H347 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
UBQLN3Q9H347 AC135983.2-203ENST00000454486 1613 ntBASIC23.47■■□□□ 1.35
UBQLN3Q9H347 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
UBQLN3Q9H347 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.46■■□□□ 1.35
UBQLN3Q9H347 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.46■■□□□ 1.35
UBQLN3Q9H347 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.46■■□□□ 1.35
UBQLN3Q9H347 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
UBQLN3Q9H347 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
UBQLN3Q9H347 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
UBQLN3Q9H347 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.45■■□□□ 1.34
UBQLN3Q9H347 AC016575.1-201ENST00000607026 382 ntBASIC23.45■■□□□ 1.34
UBQLN3Q9H347 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
UBQLN3Q9H347 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
UBQLN3Q9H347 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.44■■□□□ 1.34
UBQLN3Q9H347 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.44■■□□□ 1.34
UBQLN3Q9H347 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
UBQLN3Q9H347 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
UBQLN3Q9H347 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
UBQLN3Q9H347 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.43■■□□□ 1.34
UBQLN3Q9H347 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
UBQLN3Q9H347 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
UBQLN3Q9H347 MIR639-201ENST00000384974 98 ntBASIC23.43■■□□□ 1.34
UBQLN3Q9H347 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
UBQLN3Q9H347 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
UBQLN3Q9H347 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.42■■□□□ 1.34
UBQLN3Q9H347 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
UBQLN3Q9H347 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
UBQLN3Q9H347 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC23.42■■□□□ 1.34
UBQLN3Q9H347 WHAMMP2-203ENST00000563942 1603 ntBASIC23.41■■□□□ 1.34
UBQLN3Q9H347 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.41■■□□□ 1.34
UBQLN3Q9H347 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.41■■□□□ 1.34
UBQLN3Q9H347 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.41■■□□□ 1.34
UBQLN3Q9H347 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.4■■□□□ 1.34
UBQLN3Q9H347 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
UBQLN3Q9H347 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
UBQLN3Q9H347 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
UBQLN3Q9H347 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.4■■□□□ 1.34
UBQLN3Q9H347 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
UBQLN3Q9H347 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
UBQLN3Q9H347 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
UBQLN3Q9H347 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.34
UBQLN3Q9H347 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC23.39■■□□□ 1.33
UBQLN3Q9H347 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
UBQLN3Q9H347 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC23.38■■□□□ 1.33
UBQLN3Q9H347 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
UBQLN3Q9H347 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
UBQLN3Q9H347 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
UBQLN3Q9H347 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.36■■□□□ 1.33
UBQLN3Q9H347 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
UBQLN3Q9H347 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC23.35■■□□□ 1.33
UBQLN3Q9H347 AP004833.2-201ENST00000532228 1454 ntBASIC23.35■■□□□ 1.33
UBQLN3Q9H347 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.35■■□□□ 1.33
UBQLN3Q9H347 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.34■■□□□ 1.33
UBQLN3Q9H347 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
UBQLN3Q9H347 MIR4449-201ENST00000578365 66 ntBASIC23.34■■□□□ 1.33
UBQLN3Q9H347 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
UBQLN3Q9H347 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
UBQLN3Q9H347 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
UBQLN3Q9H347 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.33■■□□□ 1.33
UBQLN3Q9H347 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
UBQLN3Q9H347 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
UBQLN3Q9H347 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
UBQLN3Q9H347 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
UBQLN3Q9H347 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
UBQLN3Q9H347 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.31■■□□□ 1.32
UBQLN3Q9H347 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
UBQLN3Q9H347 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UBQLN3Q9H347 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UBQLN3Q9H347 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.3■■□□□ 1.32
UBQLN3Q9H347 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UBQLN3Q9H347 AL121749.1-202ENST00000609313 2153 ntBASIC23.3■■□□□ 1.32
UBQLN3Q9H347 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.3■■□□□ 1.32
UBQLN3Q9H347 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC23.3■■□□□ 1.32
UBQLN3Q9H347 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
UBQLN3Q9H347 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC23.3■■□□□ 1.32
UBQLN3Q9H347 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
UBQLN3Q9H347 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
UBQLN3Q9H347 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
UBQLN3Q9H347 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC23.29■■□□□ 1.32
UBQLN3Q9H347 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
UBQLN3Q9H347 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
UBQLN3Q9H347 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
UBQLN3Q9H347 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
UBQLN3Q9H347 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
UBQLN3Q9H347 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
UBQLN3Q9H347 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
UBQLN3Q9H347 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
UBQLN3Q9H347 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms