Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
ATG4AQ8WYN0 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
ATG4AQ8WYN0 MIR6090-201ENST00000622481 60 ntBASIC26.33■■□□□ 1.81
ATG4AQ8WYN0 AP002414.2-202ENST00000590929 1450 ntBASIC26.33■■□□□ 1.81
ATG4AQ8WYN0 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
ATG4AQ8WYN0 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
ATG4AQ8WYN0 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
ATG4AQ8WYN0 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
ATG4AQ8WYN0 AC135983.2-203ENST00000454486 1613 ntBASIC26.32■■□□□ 1.8
ATG4AQ8WYN0 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC26.31■■□□□ 1.8
ATG4AQ8WYN0 DUX4L28-201ENST00000623687 678 ntBASIC26.31■■□□□ 1.8
ATG4AQ8WYN0 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
ATG4AQ8WYN0 WHAMMP2-203ENST00000563942 1603 ntBASIC26.31■■□□□ 1.8
ATG4AQ8WYN0 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.31■■□□□ 1.8
ATG4AQ8WYN0 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
ATG4AQ8WYN0 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
ATG4AQ8WYN0 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
ATG4AQ8WYN0 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
ATG4AQ8WYN0 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
ATG4AQ8WYN0 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.28■■□□□ 1.8
ATG4AQ8WYN0 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
ATG4AQ8WYN0 PKM-203ENST00000389093 2279 ntTSL 5 BASIC26.28■■□□□ 1.8
ATG4AQ8WYN0 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
ATG4AQ8WYN0 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
ATG4AQ8WYN0 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
ATG4AQ8WYN0 AC108673.1-201ENST00000510422 1159 ntBASIC26.27■■□□□ 1.8
ATG4AQ8WYN0 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
ATG4AQ8WYN0 MEST-211ENST00000437945 1455 ntTSL 5 BASIC26.27■■□□□ 1.8
ATG4AQ8WYN0 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC26.27■■□□□ 1.8
ATG4AQ8WYN0 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
ATG4AQ8WYN0 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
ATG4AQ8WYN0 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
ATG4AQ8WYN0 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
ATG4AQ8WYN0 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC26.24■■□□□ 1.79
ATG4AQ8WYN0 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
ATG4AQ8WYN0 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
ATG4AQ8WYN0 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC26.24■■□□□ 1.79
ATG4AQ8WYN0 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
ATG4AQ8WYN0 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.23■■□□□ 1.79
ATG4AQ8WYN0 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.22■■□□□ 1.79
ATG4AQ8WYN0 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
ATG4AQ8WYN0 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
ATG4AQ8WYN0 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.22■■□□□ 1.79
ATG4AQ8WYN0 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
ATG4AQ8WYN0 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
ATG4AQ8WYN0 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC26.2■■□□□ 1.78
ATG4AQ8WYN0 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
ATG4AQ8WYN0 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC26.19■■□□□ 1.78
ATG4AQ8WYN0 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
ATG4AQ8WYN0 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.18■■□□□ 1.78
ATG4AQ8WYN0 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
ATG4AQ8WYN0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
ATG4AQ8WYN0 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
ATG4AQ8WYN0 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
ATG4AQ8WYN0 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC26.18■■□□□ 1.78
ATG4AQ8WYN0 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
ATG4AQ8WYN0 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
ATG4AQ8WYN0 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC26.18■■□□□ 1.78
ATG4AQ8WYN0 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
ATG4AQ8WYN0 LINC00273-201ENST00000539813 1452 ntBASIC26.17■■□□□ 1.78
ATG4AQ8WYN0 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.17■■□□□ 1.78
ATG4AQ8WYN0 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.17■■□□□ 1.78
ATG4AQ8WYN0 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
ATG4AQ8WYN0 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
ATG4AQ8WYN0 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.16■■□□□ 1.78
ATG4AQ8WYN0 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.16■■□□□ 1.78
ATG4AQ8WYN0 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
ATG4AQ8WYN0 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC26.15■■□□□ 1.78
ATG4AQ8WYN0 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
ATG4AQ8WYN0 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.15■■□□□ 1.78
ATG4AQ8WYN0 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.15■■□□□ 1.78
ATG4AQ8WYN0 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
ATG4AQ8WYN0 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC26.14■■□□□ 1.78
ATG4AQ8WYN0 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
ATG4AQ8WYN0 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
ATG4AQ8WYN0 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
ATG4AQ8WYN0 AC018358.1-201ENST00000631079 1402 ntBASIC26.14■■□□□ 1.77
ATG4AQ8WYN0 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC26.13■■□□□ 1.77
ATG4AQ8WYN0 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.13■■□□□ 1.77
ATG4AQ8WYN0 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
ATG4AQ8WYN0 MIR3665-201ENST00000578708 105 ntBASIC26.13■■□□□ 1.77
ATG4AQ8WYN0 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
ATG4AQ8WYN0 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
ATG4AQ8WYN0 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
ATG4AQ8WYN0 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
ATG4AQ8WYN0 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
ATG4AQ8WYN0 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
ATG4AQ8WYN0 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
ATG4AQ8WYN0 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
ATG4AQ8WYN0 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
ATG4AQ8WYN0 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
ATG4AQ8WYN0 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
ATG4AQ8WYN0 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.09■■□□□ 1.77
ATG4AQ8WYN0 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.09■■□□□ 1.77
ATG4AQ8WYN0 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.09■■□□□ 1.77
ATG4AQ8WYN0 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC26.09■■□□□ 1.77
ATG4AQ8WYN0 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
ATG4AQ8WYN0 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
ATG4AQ8WYN0 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.76
ATG4AQ8WYN0 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms