Protein–RNA interactions for Protein: Q8TD47

RPS4Y2, 40S ribosomal protein S4, Y isoform 2, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y2Q8TD47 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
RPS4Y2Q8TD47 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
RPS4Y2Q8TD47 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.25■■□□□ 1.15
RPS4Y2Q8TD47 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
RPS4Y2Q8TD47 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC22.24■■□□□ 1.15
RPS4Y2Q8TD47 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
RPS4Y2Q8TD47 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
RPS4Y2Q8TD47 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
RPS4Y2Q8TD47 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC22.23■■□□□ 1.15
RPS4Y2Q8TD47 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC22.23■■□□□ 1.15
RPS4Y2Q8TD47 AC018358.1-201ENST00000631079 1402 ntBASIC22.23■■□□□ 1.15
RPS4Y2Q8TD47 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
RPS4Y2Q8TD47 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
RPS4Y2Q8TD47 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RPS4Y2Q8TD47 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
RPS4Y2Q8TD47 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RPS4Y2Q8TD47 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RPS4Y2Q8TD47 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
RPS4Y2Q8TD47 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
RPS4Y2Q8TD47 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RPS4Y2Q8TD47 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RPS4Y2Q8TD47 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RPS4Y2Q8TD47 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC22.21■■□□□ 1.15
RPS4Y2Q8TD47 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RPS4Y2Q8TD47 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
RPS4Y2Q8TD47 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RPS4Y2Q8TD47 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RPS4Y2Q8TD47 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RPS4Y2Q8TD47 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC22.2■■□□□ 1.14
RPS4Y2Q8TD47 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC22.2■■□□□ 1.14
RPS4Y2Q8TD47 AC136428.2-201ENST00000563187 214 ntBASIC22.2■■□□□ 1.14
RPS4Y2Q8TD47 MEST-211ENST00000437945 1455 ntTSL 5 BASIC22.2■■□□□ 1.14
RPS4Y2Q8TD47 AL449106.1-201ENST00000608517 1980 ntBASIC22.19■■□□□ 1.14
RPS4Y2Q8TD47 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RPS4Y2Q8TD47 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RPS4Y2Q8TD47 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RPS4Y2Q8TD47 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RPS4Y2Q8TD47 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.18■■□□□ 1.14
RPS4Y2Q8TD47 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RPS4Y2Q8TD47 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
RPS4Y2Q8TD47 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RPS4Y2Q8TD47 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RPS4Y2Q8TD47 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
RPS4Y2Q8TD47 AC091060.1-201ENST00000623524 1766 ntBASIC22.18■■□□□ 1.14
RPS4Y2Q8TD47 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC22.18■■□□□ 1.14
RPS4Y2Q8TD47 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC22.18■■□□□ 1.14
RPS4Y2Q8TD47 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
RPS4Y2Q8TD47 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RPS4Y2Q8TD47 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RPS4Y2Q8TD47 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
RPS4Y2Q8TD47 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RPS4Y2Q8TD47 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
RPS4Y2Q8TD47 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
RPS4Y2Q8TD47 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RPS4Y2Q8TD47 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC22.15■■□□□ 1.14
RPS4Y2Q8TD47 AC135983.2-203ENST00000454486 1613 ntBASIC22.15■■□□□ 1.14
RPS4Y2Q8TD47 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RPS4Y2Q8TD47 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
RPS4Y2Q8TD47 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RPS4Y2Q8TD47 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RPS4Y2Q8TD47 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
RPS4Y2Q8TD47 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.14
RPS4Y2Q8TD47 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
RPS4Y2Q8TD47 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
RPS4Y2Q8TD47 AC135731.1-201ENST00000569415 2548 ntBASIC22.14■■□□□ 1.13
RPS4Y2Q8TD47 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
RPS4Y2Q8TD47 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC22.13■■□□□ 1.13
RPS4Y2Q8TD47 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC22.13■■□□□ 1.13
RPS4Y2Q8TD47 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
RPS4Y2Q8TD47 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.13■■□□□ 1.13
RPS4Y2Q8TD47 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
RPS4Y2Q8TD47 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC22.13■■□□□ 1.13
RPS4Y2Q8TD47 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
RPS4Y2Q8TD47 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC22.11■■□□□ 1.13
RPS4Y2Q8TD47 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
RPS4Y2Q8TD47 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
RPS4Y2Q8TD47 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC22.1■■□□□ 1.13
RPS4Y2Q8TD47 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
RPS4Y2Q8TD47 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RPS4Y2Q8TD47 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
RPS4Y2Q8TD47 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC22.09■■□□□ 1.13
RPS4Y2Q8TD47 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC22.09■■□□□ 1.13
RPS4Y2Q8TD47 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RPS4Y2Q8TD47 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RPS4Y2Q8TD47 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.09■■□□□ 1.13
RPS4Y2Q8TD47 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
RPS4Y2Q8TD47 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RPS4Y2Q8TD47 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RPS4Y2Q8TD47 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RPS4Y2Q8TD47 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC22.08■■□□□ 1.13
RPS4Y2Q8TD47 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
RPS4Y2Q8TD47 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
RPS4Y2Q8TD47 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RPS4Y2Q8TD47 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RPS4Y2Q8TD47 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RPS4Y2Q8TD47 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC22.07■■□□□ 1.12
RPS4Y2Q8TD47 MIR762-201ENST00000390236 83 ntBASIC22.06■■□□□ 1.12
RPS4Y2Q8TD47 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC22.06■■□□□ 1.12
RPS4Y2Q8TD47 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RPS4Y2Q8TD47 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.05■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms