Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
USP48Q86UV5 AC018358.1-201ENST00000631079 1402 ntBASIC31.17■■■□□ 2.58
USP48Q86UV5 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC31.17■■■□□ 2.58
USP48Q86UV5 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
USP48Q86UV5 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
USP48Q86UV5 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
USP48Q86UV5 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC31.16■■■□□ 2.58
USP48Q86UV5 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
USP48Q86UV5 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
USP48Q86UV5 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
USP48Q86UV5 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC31.15■■■□□ 2.58
USP48Q86UV5 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
USP48Q86UV5 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.13■■■□□ 2.57
USP48Q86UV5 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC31.12■■■□□ 2.57
USP48Q86UV5 U85056.1-201ENST00000616429 682 ntBASIC31.12■■■□□ 2.57
USP48Q86UV5 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP48Q86UV5 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP48Q86UV5 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
USP48Q86UV5 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP48Q86UV5 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
USP48Q86UV5 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC31.11■■■□□ 2.57
USP48Q86UV5 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.11■■■□□ 2.57
USP48Q86UV5 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
USP48Q86UV5 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC31.11■■■□□ 2.57
USP48Q86UV5 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
USP48Q86UV5 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC31.1■■■□□ 2.57
USP48Q86UV5 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
USP48Q86UV5 ST7-AS1-201ENST00000456775 1889 ntBASIC31.09■■■□□ 2.57
USP48Q86UV5 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
USP48Q86UV5 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.09■■■□□ 2.57
USP48Q86UV5 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.08■■■□□ 2.57
USP48Q86UV5 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC31.08■■■□□ 2.57
USP48Q86UV5 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.08■■■□□ 2.57
USP48Q86UV5 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
USP48Q86UV5 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
USP48Q86UV5 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
USP48Q86UV5 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC31.06■■■□□ 2.56
USP48Q86UV5 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
USP48Q86UV5 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
USP48Q86UV5 HYI-213ENST00000583037 1322 ntTSL 5 BASIC31.05■■■□□ 2.56
USP48Q86UV5 AL161658.1-201ENST00000623641 1967 ntBASIC31.05■■■□□ 2.56
USP48Q86UV5 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC31.05■■■□□ 2.56
USP48Q86UV5 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.05■■■□□ 2.56
USP48Q86UV5 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.04■■■□□ 2.56
USP48Q86UV5 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC31.04■■■□□ 2.56
USP48Q86UV5 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC31.04■■■□□ 2.56
USP48Q86UV5 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC31.03■■■□□ 2.56
USP48Q86UV5 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
USP48Q86UV5 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.02■■■□□ 2.56
USP48Q86UV5 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.01■■■□□ 2.56
USP48Q86UV5 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC31.01■■■□□ 2.55
USP48Q86UV5 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31■■■□□ 2.55
USP48Q86UV5 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
USP48Q86UV5 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC31■■■□□ 2.55
USP48Q86UV5 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
USP48Q86UV5 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
USP48Q86UV5 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC30.98■■■□□ 2.55
USP48Q86UV5 GFER-205ENST00000569451 517 ntTSL 5 BASIC30.98■■■□□ 2.55
USP48Q86UV5 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
USP48Q86UV5 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
USP48Q86UV5 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
USP48Q86UV5 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC30.96■■■□□ 2.55
USP48Q86UV5 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
USP48Q86UV5 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC30.96■■■□□ 2.55
USP48Q86UV5 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
USP48Q86UV5 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
USP48Q86UV5 CHST11-203ENST00000547956 936 ntTSL 2 BASIC30.95■■■□□ 2.55
USP48Q86UV5 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC30.95■■■□□ 2.54
USP48Q86UV5 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.94■■■□□ 2.54
USP48Q86UV5 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
USP48Q86UV5 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
USP48Q86UV5 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
USP48Q86UV5 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
USP48Q86UV5 TSPY13P-201ENST00000338964 914 ntBASIC30.93■■■□□ 2.54
USP48Q86UV5 AC004987.1-201ENST00000428627 508 ntBASIC30.93■■■□□ 2.54
USP48Q86UV5 AC060814.1-201ENST00000554326 538 ntBASIC30.93■■■□□ 2.54
USP48Q86UV5 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC30.92■■■□□ 2.54
USP48Q86UV5 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
USP48Q86UV5 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
USP48Q86UV5 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
USP48Q86UV5 AC010864.1-201ENST00000609407 1511 ntBASIC30.92■■■□□ 2.54
USP48Q86UV5 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.91■■■□□ 2.54
USP48Q86UV5 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
USP48Q86UV5 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC30.91■■■□□ 2.54
USP48Q86UV5 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
USP48Q86UV5 KRT18P60-201ENST00000312876 1297 ntBASIC30.9■■■□□ 2.54
USP48Q86UV5 RARRES2P1-201ENST00000474487 481 ntBASIC30.9■■■□□ 2.54
USP48Q86UV5 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC30.89■■■□□ 2.54
USP48Q86UV5 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
USP48Q86UV5 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC30.89■■■□□ 2.54
USP48Q86UV5 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC30.88■■■□□ 2.53
USP48Q86UV5 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
USP48Q86UV5 ATP5G2P3-201ENST00000429083 425 ntBASIC30.88■■■□□ 2.53
USP48Q86UV5 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
USP48Q86UV5 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC30.88■■■□□ 2.53
USP48Q86UV5 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC30.87■■■□□ 2.53
USP48Q86UV5 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
USP48Q86UV5 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
USP48Q86UV5 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
USP48Q86UV5 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 8.6 ms