Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PDLIM4P50479 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
PDLIM4P50479 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PDLIM4P50479 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PDLIM4P50479 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.53■■□□□ 1.04
PDLIM4P50479 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.53■■□□□ 1.04
PDLIM4P50479 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PDLIM4P50479 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.52■■□□□ 1.04
PDLIM4P50479 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PDLIM4P50479 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
PDLIM4P50479 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PDLIM4P50479 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PDLIM4P50479 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.51■■□□□ 1.03
PDLIM4P50479 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PDLIM4P50479 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
PDLIM4P50479 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PDLIM4P50479 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PDLIM4P50479 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PDLIM4P50479 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.49■■□□□ 1.03
PDLIM4P50479 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PDLIM4P50479 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PDLIM4P50479 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.48■■□□□ 1.03
PDLIM4P50479 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PDLIM4P50479 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PDLIM4P50479 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PDLIM4P50479 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PDLIM4P50479 AC148477.6-201ENST00000623746 465 ntBASIC21.47■■□□□ 1.03
PDLIM4P50479 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PDLIM4P50479 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PDLIM4P50479 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PDLIM4P50479 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.46■■□□□ 1.03
PDLIM4P50479 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
PDLIM4P50479 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PDLIM4P50479 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
PDLIM4P50479 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PDLIM4P50479 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.45■■□□□ 1.02
PDLIM4P50479 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PDLIM4P50479 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDLIM4P50479 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PDLIM4P50479 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
PDLIM4P50479 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDLIM4P50479 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
PDLIM4P50479 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.44■■□□□ 1.02
PDLIM4P50479 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PDLIM4P50479 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.43■■□□□ 1.02
PDLIM4P50479 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
PDLIM4P50479 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
PDLIM4P50479 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
PDLIM4P50479 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDLIM4P50479 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDLIM4P50479 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDLIM4P50479 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PDLIM4P50479 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
PDLIM4P50479 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.41■■□□□ 1.02
PDLIM4P50479 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.41■■□□□ 1.02
PDLIM4P50479 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
PDLIM4P50479 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PDLIM4P50479 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PDLIM4P50479 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PDLIM4P50479 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.4■■□□□ 1.02
PDLIM4P50479 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.4■■□□□ 1.02
PDLIM4P50479 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
PDLIM4P50479 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PDLIM4P50479 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.39■■□□□ 1.02
PDLIM4P50479 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.39■■□□□ 1.02
PDLIM4P50479 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
PDLIM4P50479 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
PDLIM4P50479 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
PDLIM4P50479 ABCB10P3-201ENST00000561950 2166 ntBASIC21.38■■□□□ 1.01
PDLIM4P50479 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDLIM4P50479 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.38■■□□□ 1.01
PDLIM4P50479 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDLIM4P50479 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDLIM4P50479 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PDLIM4P50479 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.38■■□□□ 1.01
PDLIM4P50479 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.37■■□□□ 1.01
PDLIM4P50479 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.37■■□□□ 1.01
PDLIM4P50479 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDLIM4P50479 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PDLIM4P50479 MIR219A2-201ENST00000608502 1504 ntBASIC21.37■■□□□ 1.01
PDLIM4P50479 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDLIM4P50479 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PDLIM4P50479 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PDLIM4P50479 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
PDLIM4P50479 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
PDLIM4P50479 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.36■■□□□ 1.01
PDLIM4P50479 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
PDLIM4P50479 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PDLIM4P50479 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PDLIM4P50479 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
PDLIM4P50479 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PDLIM4P50479 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.35■■□□□ 1.01
PDLIM4P50479 AC060814.1-201ENST00000554326 538 ntBASIC21.35■■□□□ 1.01
PDLIM4P50479 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
PDLIM4P50479 NTF6A-201ENST00000591175 560 ntBASIC21.34■■□□□ 1.01
PDLIM4P50479 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.34■■□□□ 1.01
PDLIM4P50479 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PDLIM4P50479 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
PDLIM4P50479 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
PDLIM4P50479 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms