Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PDGFAP04085 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PDGFAP04085 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PDGFAP04085 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PDGFAP04085 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
PDGFAP04085 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
PDGFAP04085 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PDGFAP04085 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PDGFAP04085 AL033527.3-201ENST00000566366 1196 ntBASIC23.65■■□□□ 1.38
PDGFAP04085 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
PDGFAP04085 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.64■■□□□ 1.38
PDGFAP04085 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
PDGFAP04085 U85056.1-201ENST00000616429 682 ntBASIC23.64■■□□□ 1.37
PDGFAP04085 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PDGFAP04085 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PDGFAP04085 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PDGFAP04085 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
PDGFAP04085 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PDGFAP04085 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PDGFAP04085 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.62■■□□□ 1.37
PDGFAP04085 AC060814.1-201ENST00000554326 538 ntBASIC23.62■■□□□ 1.37
PDGFAP04085 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PDGFAP04085 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PDGFAP04085 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PDGFAP04085 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.61■■□□□ 1.37
PDGFAP04085 AC110285.7-201ENST00000624417 1536 ntBASIC23.61■■□□□ 1.37
PDGFAP04085 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PDGFAP04085 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PDGFAP04085 AC018358.1-201ENST00000631079 1402 ntBASIC23.6■■□□□ 1.37
PDGFAP04085 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PDGFAP04085 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.6■■□□□ 1.37
PDGFAP04085 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PDGFAP04085 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.6■■□□□ 1.37
PDGFAP04085 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PDGFAP04085 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
PDGFAP04085 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.59■■□□□ 1.37
PDGFAP04085 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
PDGFAP04085 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.59■■□□□ 1.37
PDGFAP04085 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.58■■□□□ 1.37
PDGFAP04085 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
PDGFAP04085 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PDGFAP04085 AC148477.6-201ENST00000623746 465 ntBASIC23.56■■□□□ 1.36
PDGFAP04085 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.55■■□□□ 1.36
PDGFAP04085 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
PDGFAP04085 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.54■■□□□ 1.36
PDGFAP04085 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PDGFAP04085 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.54■■□□□ 1.36
PDGFAP04085 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
PDGFAP04085 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PDGFAP04085 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PDGFAP04085 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
PDGFAP04085 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.52■■□□□ 1.36
PDGFAP04085 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PDGFAP04085 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PDGFAP04085 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.52■■□□□ 1.36
PDGFAP04085 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.52■■□□□ 1.36
PDGFAP04085 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
PDGFAP04085 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.52■■□□□ 1.36
PDGFAP04085 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.51■■□□□ 1.35
PDGFAP04085 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.51■■□□□ 1.35
PDGFAP04085 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.51■■□□□ 1.35
PDGFAP04085 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
PDGFAP04085 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PDGFAP04085 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
PDGFAP04085 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
PDGFAP04085 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.5■■□□□ 1.35
PDGFAP04085 MIR219A2-201ENST00000608502 1504 ntBASIC23.49■■□□□ 1.35
PDGFAP04085 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
PDGFAP04085 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
PDGFAP04085 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
PDGFAP04085 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PDGFAP04085 KRT18P60-201ENST00000312876 1297 ntBASIC23.48■■□□□ 1.35
PDGFAP04085 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.48■■□□□ 1.35
PDGFAP04085 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.48■■□□□ 1.35
PDGFAP04085 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
PDGFAP04085 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PDGFAP04085 AC092296.2-201ENST00000589470 999 ntBASIC23.47■■□□□ 1.35
PDGFAP04085 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PDGFAP04085 AL135925.1-201ENST00000605920 1701 ntBASIC23.47■■□□□ 1.35
PDGFAP04085 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
PDGFAP04085 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PDGFAP04085 AC004987.1-201ENST00000428627 508 ntBASIC23.46■■□□□ 1.35
PDGFAP04085 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.35
PDGFAP04085 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
PDGFAP04085 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
PDGFAP04085 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
PDGFAP04085 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
PDGFAP04085 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.45■■□□□ 1.34
PDGFAP04085 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
PDGFAP04085 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
PDGFAP04085 AC135731.1-201ENST00000569415 2548 ntBASIC23.44■■□□□ 1.34
PDGFAP04085 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
PDGFAP04085 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
PDGFAP04085 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.44■■□□□ 1.34
PDGFAP04085 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
PDGFAP04085 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
PDGFAP04085 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
PDGFAP04085 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
PDGFAP04085 TSPY13P-201ENST00000338964 914 ntBASIC23.43■■□□□ 1.34
PDGFAP04085 ATP5G2P3-201ENST00000429083 425 ntBASIC23.43■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms