Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL2A1P02458 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.3■■■□□ 2.44
COL2A1P02458 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.3■■■□□ 2.44
COL2A1P02458 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC30.3■■■□□ 2.44
COL2A1P02458 HES4-202ENST00000428771 1040 ntTSL 2 BASIC30.3■■■□□ 2.44
COL2A1P02458 AC060814.1-201ENST00000554326 538 ntBASIC30.3■■■□□ 2.44
COL2A1P02458 MIR219A2-201ENST00000608502 1504 ntBASIC30.28■■■□□ 2.44
COL2A1P02458 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL2A1P02458 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL2A1P02458 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
COL2A1P02458 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL2A1P02458 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
COL2A1P02458 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL2A1P02458 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC30.26■■■□□ 2.43
COL2A1P02458 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL2A1P02458 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
COL2A1P02458 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL2A1P02458 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL2A1P02458 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
COL2A1P02458 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC30.25■■■□□ 2.43
COL2A1P02458 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
COL2A1P02458 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL2A1P02458 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL2A1P02458 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
COL2A1P02458 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC30.21■■■□□ 2.43
COL2A1P02458 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC30.21■■■□□ 2.43
COL2A1P02458 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL2A1P02458 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL2A1P02458 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.21■■■□□ 2.43
COL2A1P02458 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL2A1P02458 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC30.2■■■□□ 2.43
COL2A1P02458 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC30.2■■■□□ 2.43
COL2A1P02458 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.2■■■□□ 2.43
COL2A1P02458 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC30.2■■■□□ 2.43
COL2A1P02458 AC092296.2-201ENST00000589470 999 ntBASIC30.19■■■□□ 2.42
COL2A1P02458 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC30.18■■■□□ 2.42
COL2A1P02458 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
COL2A1P02458 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
COL2A1P02458 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
COL2A1P02458 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
COL2A1P02458 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
COL2A1P02458 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL2A1P02458 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC30.15■■■□□ 2.42
COL2A1P02458 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
COL2A1P02458 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
COL2A1P02458 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
COL2A1P02458 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
COL2A1P02458 NTF6A-201ENST00000591175 560 ntBASIC30.13■■■□□ 2.41
COL2A1P02458 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
COL2A1P02458 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
COL2A1P02458 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC30.11■■■□□ 2.41
COL2A1P02458 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
COL2A1P02458 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL2A1P02458 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
COL2A1P02458 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC30.1■■■□□ 2.41
COL2A1P02458 MED25-210ENST00000612854 801 ntTSL 5 BASIC30.09■■■□□ 2.41
COL2A1P02458 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC30.09■■■□□ 2.41
COL2A1P02458 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
COL2A1P02458 MED25-214ENST00000622402 642 ntTSL 5 BASIC30.09■■■□□ 2.41
COL2A1P02458 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
COL2A1P02458 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.09■■■□□ 2.41
COL2A1P02458 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.09■■■□□ 2.41
COL2A1P02458 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.08■■■□□ 2.41
COL2A1P02458 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
COL2A1P02458 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC30.08■■■□□ 2.41
COL2A1P02458 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
COL2A1P02458 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.07■■■□□ 2.4
COL2A1P02458 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
COL2A1P02458 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC30.07■■■□□ 2.4
COL2A1P02458 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC30.06■■■□□ 2.4
COL2A1P02458 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.06■■■□□ 2.4
COL2A1P02458 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL2A1P02458 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
COL2A1P02458 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC30.06■■■□□ 2.4
COL2A1P02458 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL2A1P02458 AL157400.5-201ENST00000507624 621 ntBASIC30.06■■■□□ 2.4
COL2A1P02458 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
COL2A1P02458 AC100797.4-201ENST00000631653 1827 ntBASIC30.04■■■□□ 2.4
COL2A1P02458 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC30.04■■■□□ 2.4
COL2A1P02458 AC126177.7-201ENST00000547904 679 ntBASIC30.04■■■□□ 2.4
COL2A1P02458 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC30.04■■■□□ 2.4
COL2A1P02458 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC30.03■■■□□ 2.4
COL2A1P02458 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC30.03■■■□□ 2.4
COL2A1P02458 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL2A1P02458 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
COL2A1P02458 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.03■■■□□ 2.4
COL2A1P02458 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
COL2A1P02458 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC30.02■■■□□ 2.4
COL2A1P02458 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
COL2A1P02458 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
COL2A1P02458 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC30■■■□□ 2.39
COL2A1P02458 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC30■■■□□ 2.39
COL2A1P02458 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
COL2A1P02458 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC30■■■□□ 2.39
COL2A1P02458 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
COL2A1P02458 ECEL1P2-201ENST00000461596 1295 ntBASIC29.99■■■□□ 2.39
COL2A1P02458 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC29.99■■■□□ 2.39
COL2A1P02458 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL2A1P02458 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC29.99■■■□□ 2.39
COL2A1P02458 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms