Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.03■□□□□ 0.64
HLA-DQA1P01909 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC19.03■□□□□ 0.64
HLA-DQA1P01909 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HLA-DQA1P01909 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.03■□□□□ 0.64
HLA-DQA1P01909 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
HLA-DQA1P01909 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
HLA-DQA1P01909 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC19.02■□□□□ 0.63
HLA-DQA1P01909 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HLA-DQA1P01909 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
HLA-DQA1P01909 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HLA-DQA1P01909 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HLA-DQA1P01909 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC19.01■□□□□ 0.63
HLA-DQA1P01909 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HLA-DQA1P01909 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HLA-DQA1P01909 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
HLA-DQA1P01909 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HLA-DQA1P01909 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
HLA-DQA1P01909 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC19■□□□□ 0.63
HLA-DQA1P01909 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
HLA-DQA1P01909 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HLA-DQA1P01909 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HLA-DQA1P01909 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC18.98■□□□□ 0.63
HLA-DQA1P01909 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DQA1P01909 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DQA1P01909 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DQA1P01909 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DQA1P01909 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DQA1P01909 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DQA1P01909 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC18.97■□□□□ 0.63
HLA-DQA1P01909 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DQA1P01909 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC18.97■□□□□ 0.63
HLA-DQA1P01909 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HLA-DQA1P01909 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.96■□□□□ 0.63
HLA-DQA1P01909 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HLA-DQA1P01909 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
HLA-DQA1P01909 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
HLA-DQA1P01909 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
HLA-DQA1P01909 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HLA-DQA1P01909 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HLA-DQA1P01909 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HLA-DQA1P01909 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HLA-DQA1P01909 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HLA-DQA1P01909 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HLA-DQA1P01909 RARA-203ENST00000394086 2008 ntTSL 2 BASIC18.95■□□□□ 0.62
HLA-DQA1P01909 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HLA-DQA1P01909 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HLA-DQA1P01909 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HLA-DQA1P01909 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC18.94■□□□□ 0.62
HLA-DQA1P01909 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DQA1P01909 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC18.93■□□□□ 0.62
HLA-DQA1P01909 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DQA1P01909 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DQA1P01909 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DQA1P01909 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DQA1P01909 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DQA1P01909 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DQA1P01909 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
HLA-DQA1P01909 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DQA1P01909 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC18.92■□□□□ 0.62
HLA-DQA1P01909 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DQA1P01909 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DQA1P01909 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DQA1P01909 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DQA1P01909 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DQA1P01909 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DQA1P01909 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
HLA-DQA1P01909 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC18.92■□□□□ 0.62
HLA-DQA1P01909 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HLA-DQA1P01909 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
HLA-DQA1P01909 AP004833.2-201ENST00000532228 1454 ntBASIC18.9■□□□□ 0.62
HLA-DQA1P01909 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HLA-DQA1P01909 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HLA-DQA1P01909 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HLA-DQA1P01909 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HLA-DQA1P01909 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HLA-DQA1P01909 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HLA-DQA1P01909 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HLA-DQA1P01909 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HLA-DQA1P01909 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HLA-DQA1P01909 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HLA-DQA1P01909 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
HLA-DQA1P01909 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DQA1P01909 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC18.88■□□□□ 0.61
HLA-DQA1P01909 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.88■□□□□ 0.61
HLA-DQA1P01909 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DQA1P01909 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DQA1P01909 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HLA-DQA1P01909 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC18.87■□□□□ 0.61
HLA-DQA1P01909 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
HLA-DQA1P01909 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.87■□□□□ 0.61
HLA-DQA1P01909 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DQA1P01909 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DQA1P01909 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DQA1P01909 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DQA1P01909 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC18.86■□□□□ 0.61
HLA-DQA1P01909 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC18.86■□□□□ 0.61
HLA-DQA1P01909 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HLA-DQA1P01909 AP002365.1-201ENST00000603448 772 ntBASIC18.86■□□□□ 0.61
HLA-DQA1P01909 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DQA1P01909 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms