Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
SSX4O60224 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC22.76■■□□□ 1.23
SSX4O60224 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC22.75■■□□□ 1.23
SSX4O60224 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
SSX4O60224 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
SSX4O60224 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.75■■□□□ 1.23
SSX4O60224 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
SSX4O60224 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC22.74■■□□□ 1.23
SSX4O60224 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.74■■□□□ 1.23
SSX4O60224 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
SSX4O60224 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
SSX4O60224 AL139393.2-201ENST00000608721 2025 ntBASIC22.73■■□□□ 1.23
SSX4O60224 AL135925.1-201ENST00000605920 1701 ntBASIC22.73■■□□□ 1.23
SSX4O60224 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
SSX4O60224 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
SSX4O60224 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
SSX4O60224 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.72■■□□□ 1.23
SSX4O60224 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC22.72■■□□□ 1.23
SSX4O60224 CIB2-204ENST00000557846 934 ntTSL 3 BASIC22.72■■□□□ 1.23
SSX4O60224 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.72■■□□□ 1.23
SSX4O60224 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
SSX4O60224 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC22.72■■□□□ 1.23
SSX4O60224 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
SSX4O60224 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.7■■□□□ 1.23
SSX4O60224 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SSX4O60224 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.7■■□□□ 1.22
SSX4O60224 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC22.7■■□□□ 1.22
SSX4O60224 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
SSX4O60224 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC22.7■■□□□ 1.22
SSX4O60224 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC22.7■■□□□ 1.22
SSX4O60224 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.69■■□□□ 1.22
SSX4O60224 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
SSX4O60224 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SSX4O60224 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
SSX4O60224 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
SSX4O60224 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
SSX4O60224 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
SSX4O60224 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC22.68■■□□□ 1.22
SSX4O60224 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SSX4O60224 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC22.67■■□□□ 1.22
SSX4O60224 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SSX4O60224 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SSX4O60224 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC22.67■■□□□ 1.22
SSX4O60224 AC021231.2-201ENST00000594613 730 ntBASIC22.67■■□□□ 1.22
SSX4O60224 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SSX4O60224 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC22.66■■□□□ 1.22
SSX4O60224 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SSX4O60224 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SSX4O60224 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.65■■□□□ 1.22
SSX4O60224 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.65■■□□□ 1.22
SSX4O60224 AC108673.1-201ENST00000510422 1159 ntBASIC22.65■■□□□ 1.22
SSX4O60224 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
SSX4O60224 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SSX4O60224 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SSX4O60224 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
SSX4O60224 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SSX4O60224 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SSX4O60224 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
SSX4O60224 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
SSX4O60224 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.63■■□□□ 1.21
SSX4O60224 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.63■■□□□ 1.21
SSX4O60224 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC22.62■■□□□ 1.21
SSX4O60224 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SSX4O60224 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SSX4O60224 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SSX4O60224 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC22.61■■□□□ 1.21
SSX4O60224 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SSX4O60224 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
SSX4O60224 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SSX4O60224 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SSX4O60224 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SSX4O60224 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SSX4O60224 MIR6090-201ENST00000622481 60 ntBASIC22.6■■□□□ 1.21
SSX4O60224 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SSX4O60224 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.59■■□□□ 1.21
SSX4O60224 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
SSX4O60224 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC22.59■■□□□ 1.21
SSX4O60224 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SSX4O60224 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
SSX4O60224 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SSX4O60224 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SSX4O60224 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.56■■□□□ 1.2
SSX4O60224 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SSX4O60224 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SSX4O60224 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SSX4O60224 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SSX4O60224 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SSX4O60224 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SSX4O60224 RPS2-202ENST00000526522 924 ntTSL 2 BASIC22.55■■□□□ 1.2
SSX4O60224 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC22.55■■□□□ 1.2
SSX4O60224 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
SSX4O60224 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SSX4O60224 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SSX4O60224 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC22.54■■□□□ 1.2
SSX4O60224 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SSX4O60224 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.54■■□□□ 1.2
SSX4O60224 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SSX4O60224 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SSX4O60224 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC22.53■■□□□ 1.2
SSX4O60224 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms