Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.06■□□□□ 0.64
TRIM4Q9C037 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM4Q9C037 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM4Q9C037 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.06■□□□□ 0.64
TRIM4Q9C037 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM4Q9C037 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM4Q9C037 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM4Q9C037 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM4Q9C037 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM4Q9C037 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM4Q9C037 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
TRIM4Q9C037 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM4Q9C037 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.06■□□□□ 0.64
TRIM4Q9C037 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 CDV3P1-201ENST00000471403 739 ntBASIC19.05■□□□□ 0.64
TRIM4Q9C037 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 RN7SL850P-201ENST00000579959 291 ntBASIC19.05■□□□□ 0.64
TRIM4Q9C037 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 FAM21FP-204ENST00000608637 956 ntBASIC19.05■□□□□ 0.64
TRIM4Q9C037 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
TRIM4Q9C037 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM4Q9C037 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.04■□□□□ 0.64
TRIM4Q9C037 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
TRIM4Q9C037 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
TRIM4Q9C037 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.04■□□□□ 0.64
TRIM4Q9C037 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TRIM4Q9C037 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TRIM4Q9C037 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.04■□□□□ 0.64
TRIM4Q9C037 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM4Q9C037 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.04■□□□□ 0.64
TRIM4Q9C037 AC069544.1-201ENST00000609399 999 ntBASIC19.04■□□□□ 0.64
TRIM4Q9C037 HLA-B-256ENST00000639848 1089 ntBASIC19.04■□□□□ 0.64
TRIM4Q9C037 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.04■□□□□ 0.64
TRIM4Q9C037 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
TRIM4Q9C037 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM4Q9C037 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM4Q9C037 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM4Q9C037 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM4Q9C037 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM4Q9C037 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 PNMA6B-201ENST00000538162 1200 ntBASIC19.03■□□□□ 0.64
TRIM4Q9C037 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM4Q9C037 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM4Q9C037 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM4Q9C037 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
TRIM4Q9C037 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM4Q9C037 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.02■□□□□ 0.64
TRIM4Q9C037 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM4Q9C037 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms