Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FEM1AP3-201ENST00000403722 1741 ntBASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28BQ9BUN5 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CCDC28BQ9BUN5 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 FZD10-202ENST00000539839 3282 ntBASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 AC007322.1-201ENST00000426983 750 ntBASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28BQ9BUN5 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 KRT8P8-201ENST00000434750 1448 ntBASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 LSM12P1-201ENST00000411836 588 ntBASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 AL390719.1-204ENST00000412397 1219 ntBASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 AC093787.1-201ENST00000450396 207 ntBASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 AC083906.6-201ENST00000641366 219 ntBASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 AC020763.4-201ENST00000623414 4170 ntBASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC28BQ9BUN5 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms