Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
AP1S3Q96PC3 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 AL049812.1-201ENST00000432563 2267 ntBASIC14.45□□□□□ -0.1
AP1S3Q96PC3 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 RHOF-204ENST00000537265 699 ntTSL 2 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 Z82202.1-201ENST00000623446 1880 ntBASIC14.45□□□□□ -0.1
AP1S3Q96PC3 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
AP1S3Q96PC3 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 STK25-204ENST00000405585 1643 ntTSL 2 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 AC009237.14-201ENST00000609975 1594 ntBASIC14.44□□□□□ -0.1
AP1S3Q96PC3 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 AC087633.2-202ENST00000565166 1439 ntBASIC14.44□□□□□ -0.1
AP1S3Q96PC3 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 SLC7A5P1-201ENST00000568957 537 ntBASIC14.44□□□□□ -0.1
AP1S3Q96PC3 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 AL031432.3-201ENST00000607698 485 ntBASIC14.44□□□□□ -0.1
AP1S3Q96PC3 AL356652.1-201ENST00000615962 565 ntBASIC14.44□□□□□ -0.1
AP1S3Q96PC3 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
AP1S3Q96PC3 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 PWWP2AP1-201ENST00000429776 2273 ntBASIC14.43□□□□□ -0.1
AP1S3Q96PC3 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 PCDHB18P-201ENST00000524813 2368 ntBASIC14.43□□□□□ -0.1
AP1S3Q96PC3 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 TESC-206ENST00000541210 936 ntTSL 3 BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
AP1S3Q96PC3 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms