Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 PARP1-202ENST00000366792 553 ntTSL 3 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 C2orf69P4-201ENST00000565394 541 ntBASIC16.48■□□□□ 0.23
CMTM3Q96MX0 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CMTM3Q96MX0 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 ESPNP-201ENST00000270691 2015 ntBASIC16.47■□□□□ 0.23
CMTM3Q96MX0 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.47■□□□□ 0.23
CMTM3Q96MX0 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 SIRPAP1-201ENST00000448467 1770 ntBASIC16.46■□□□□ 0.23
CMTM3Q96MX0 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 UQCRFS1P1-201ENST00000435169 820 ntBASIC16.46■□□□□ 0.23
CMTM3Q96MX0 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 CYP2T3P-201ENST00000601990 817 ntBASIC16.46■□□□□ 0.23
CMTM3Q96MX0 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CMTM3Q96MX0 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
CMTM3Q96MX0 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CMTM3Q96MX0 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CMTM3Q96MX0 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CMTM3Q96MX0 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.46■□□□□ 0.22
CMTM3Q96MX0 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 AC110285.6-201ENST00000617652 491 ntBASIC16.45■□□□□ 0.22
CMTM3Q96MX0 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 GNAS-203ENST00000306120 1878 ntBASIC16.45■□□□□ 0.22
CMTM3Q96MX0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CMTM3Q96MX0 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms