Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.77■□□□□ 0.6
PKNOX1P55347 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKNOX1P55347 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKNOX1P55347 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PKNOX1P55347 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
PKNOX1P55347 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
PKNOX1P55347 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKNOX1P55347 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKNOX1P55347 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.77■□□□□ 0.6
PKNOX1P55347 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.77■□□□□ 0.6
PKNOX1P55347 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.77■□□□□ 0.6
PKNOX1P55347 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.77■□□□□ 0.6
PKNOX1P55347 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.77■□□□□ 0.6
PKNOX1P55347 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.77■□□□□ 0.6
PKNOX1P55347 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.77■□□□□ 0.6
PKNOX1P55347 AC120498.8-201ENST00000614275 531 ntBASIC18.77■□□□□ 0.6
PKNOX1P55347 AL121829.2-201ENST00000620908 328 ntBASIC18.77■□□□□ 0.6
PKNOX1P55347 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
PKNOX1P55347 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKNOX1P55347 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKNOX1P55347 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.77■□□□□ 0.6
PKNOX1P55347 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.77■□□□□ 0.6
PKNOX1P55347 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PKNOX1P55347 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PKNOX1P55347 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
PKNOX1P55347 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.77■□□□□ 0.59
PKNOX1P55347 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PKNOX1P55347 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PKNOX1P55347 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
PKNOX1P55347 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.77■□□□□ 0.59
PKNOX1P55347 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.76■□□□□ 0.59
PKNOX1P55347 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PKNOX1P55347 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
PKNOX1P55347 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.76■□□□□ 0.59
PKNOX1P55347 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.76■□□□□ 0.59
PKNOX1P55347 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
PKNOX1P55347 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.76■□□□□ 0.59
PKNOX1P55347 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.76■□□□□ 0.59
PKNOX1P55347 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.76■□□□□ 0.59
PKNOX1P55347 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PKNOX1P55347 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.76■□□□□ 0.59
PKNOX1P55347 KRT18P16-201ENST00000510337 1294 ntBASIC18.76■□□□□ 0.59
PKNOX1P55347 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.76■□□□□ 0.59
PKNOX1P55347 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.76■□□□□ 0.59
PKNOX1P55347 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
PKNOX1P55347 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
PKNOX1P55347 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.76■□□□□ 0.59
PKNOX1P55347 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKNOX1P55347 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.76■□□□□ 0.59
PKNOX1P55347 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.75■□□□□ 0.59
PKNOX1P55347 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PKNOX1P55347 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PKNOX1P55347 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PKNOX1P55347 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
PKNOX1P55347 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PKNOX1P55347 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.75■□□□□ 0.59
PKNOX1P55347 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PKNOX1P55347 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.75■□□□□ 0.59
PKNOX1P55347 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PKNOX1P55347 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
PKNOX1P55347 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.75■□□□□ 0.59
PKNOX1P55347 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
PKNOX1P55347 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.75■□□□□ 0.59
PKNOX1P55347 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.75■□□□□ 0.59
PKNOX1P55347 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.75■□□□□ 0.59
PKNOX1P55347 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
PKNOX1P55347 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PKNOX1P55347 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PKNOX1P55347 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PKNOX1P55347 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PKNOX1P55347 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PKNOX1P55347 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
PKNOX1P55347 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
PKNOX1P55347 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
PKNOX1P55347 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.74■□□□□ 0.59
PKNOX1P55347 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
PKNOX1P55347 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.74■□□□□ 0.59
PKNOX1P55347 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.74■□□□□ 0.59
PKNOX1P55347 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms