Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCPP55072 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCPP55072 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VCPP55072 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCPP55072 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.48■□□□□ 0.87
VCPP55072 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.48■□□□□ 0.87
VCPP55072 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.47■□□□□ 0.87
VCPP55072 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 AP001271.2-201ENST00000624018 1556 ntBASIC20.47■□□□□ 0.87
VCPP55072 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.47■□□□□ 0.87
VCPP55072 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.47■□□□□ 0.87
VCPP55072 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.47■□□□□ 0.87
VCPP55072 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.47■□□□□ 0.87
VCPP55072 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.47■□□□□ 0.87
VCPP55072 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.47■□□□□ 0.87
VCPP55072 AP000550.4-202ENST00000639755 178 ntBASIC20.47■□□□□ 0.87
VCPP55072 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VCPP55072 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VCPP55072 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 AC087289.5-201ENST00000586076 3175 ntBASIC20.47■□□□□ 0.87
VCPP55072 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VCPP55072 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.46■□□□□ 0.87
VCPP55072 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.46■□□□□ 0.87
VCPP55072 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VCPP55072 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCPP55072 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.46■□□□□ 0.87
VCPP55072 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.46■□□□□ 0.87
VCPP55072 BX664615.1-201ENST00000443558 458 ntBASIC20.46■□□□□ 0.87
VCPP55072 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
VCPP55072 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.46■□□□□ 0.87
VCPP55072 AC004264.1-201ENST00000608354 794 ntBASIC20.46■□□□□ 0.87
VCPP55072 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.46■□□□□ 0.87
VCPP55072 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VCPP55072 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCPP55072 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
VCPP55072 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.46■□□□□ 0.87
VCPP55072 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.46■□□□□ 0.87
VCPP55072 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
VCPP55072 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCPP55072 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCPP55072 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
VCPP55072 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.45■□□□□ 0.87
VCPP55072 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VCPP55072 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VCPP55072 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VCPP55072 AC018445.3-201ENST00000624177 1945 ntBASIC20.45■□□□□ 0.86
VCPP55072 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.45■□□□□ 0.86
VCPP55072 BX323043.1-201ENST00000641006 1765 ntBASIC20.45■□□□□ 0.86
VCPP55072 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.45■□□□□ 0.86
VCPP55072 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
VCPP55072 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.45■□□□□ 0.86
VCPP55072 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VCPP55072 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VCPP55072 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.45■□□□□ 0.86
VCPP55072 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VCPP55072 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VCPP55072 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VCPP55072 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VCPP55072 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.45■□□□□ 0.86
VCPP55072 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VCPP55072 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.45■□□□□ 0.86
VCPP55072 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
VCPP55072 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.44■□□□□ 0.86
VCPP55072 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
VCPP55072 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.44■□□□□ 0.86
VCPP55072 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.44■□□□□ 0.86
VCPP55072 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.44■□□□□ 0.86
VCPP55072 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.44■□□□□ 0.86
VCPP55072 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
VCPP55072 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
VCPP55072 AC117947.1-201ENST00000427448 529 ntBASIC20.44■□□□□ 0.86
VCPP55072 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.44■□□□□ 0.86
VCPP55072 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
VCPP55072 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.44■□□□□ 0.86
VCPP55072 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
VCPP55072 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms