Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NUDT16P1-203ENST00000513809 620 ntBASIC17.55■□□□□ 0.4
MSX1P28360 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSX1P28360 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.55■□□□□ 0.4
MSX1P28360 MIR6786-201ENST00000616843 113 ntBASIC17.55■□□□□ 0.4
MSX1P28360 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.55■□□□□ 0.4
MSX1P28360 AC092865.7-201ENST00000641832 219 ntBASIC17.55■□□□□ 0.4
MSX1P28360 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
MSX1P28360 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSX1P28360 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.55■□□□□ 0.4
MSX1P28360 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSX1P28360 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
MSX1P28360 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
MSX1P28360 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
MSX1P28360 Z82202.1-201ENST00000623446 1880 ntBASIC17.54■□□□□ 0.4
MSX1P28360 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
MSX1P28360 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
MSX1P28360 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.54■□□□□ 0.4
MSX1P28360 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
MSX1P28360 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
MSX1P28360 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 KRT18P35-201ENST00000510488 1269 ntBASIC17.54■□□□□ 0.4
MSX1P28360 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.54■□□□□ 0.4
MSX1P28360 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
MSX1P28360 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
MSX1P28360 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.54■□□□□ 0.4
MSX1P28360 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.54■□□□□ 0.4
MSX1P28360 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.54■□□□□ 0.4
MSX1P28360 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.54■□□□□ 0.4
MSX1P28360 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX1P28360 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.53■□□□□ 0.4
MSX1P28360 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
MSX1P28360 HCG11-201ENST00000411553 5696 ntBASIC17.53■□□□□ 0.4
MSX1P28360 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
MSX1P28360 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.53■□□□□ 0.4
MSX1P28360 Z85996.1-201ENST00000494644 937 ntBASIC17.53■□□□□ 0.4
MSX1P28360 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.53■□□□□ 0.4
MSX1P28360 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.53■□□□□ 0.4
MSX1P28360 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.53■□□□□ 0.4
MSX1P28360 REXO1L10P-201ENST00000615707 1290 ntBASIC17.53■□□□□ 0.4
MSX1P28360 AC005363.2-201ENST00000618631 242 ntBASIC17.53■□□□□ 0.4
MSX1P28360 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.53■□□□□ 0.4
MSX1P28360 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.53■□□□□ 0.4
MSX1P28360 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 AC093484.2-201ENST00000580996 2166 ntBASIC17.53■□□□□ 0.4
MSX1P28360 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
MSX1P28360 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSX1P28360 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
MSX1P28360 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
MSX1P28360 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.52■□□□□ 0.4
MSX1P28360 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
MSX1P28360 FSCN1P1-201ENST00000568912 1481 ntBASIC17.52■□□□□ 0.4
MSX1P28360 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.52■□□□□ 0.4
MSX1P28360 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX1P28360 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.52■□□□□ 0.4
MSX1P28360 AC004951.3-201ENST00000418645 1148 ntBASIC17.52■□□□□ 0.4
MSX1P28360 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.52■□□□□ 0.4
MSX1P28360 TSPY21P-201ENST00000433481 731 ntBASIC17.52■□□□□ 0.4
MSX1P28360 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.52■□□□□ 0.4
MSX1P28360 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
MSX1P28360 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.52■□□□□ 0.4
MSX1P28360 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.52■□□□□ 0.4
MSX1P28360 AL049597.2-201ENST00000565575 961 ntBASIC17.52■□□□□ 0.4
MSX1P28360 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms