Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 HCG11-201ENST00000411553 5696 ntBASIC16.21■□□□□ 0.19
USF1P22415 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.21■□□□□ 0.19
USF1P22415 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC16.21■□□□□ 0.19
USF1P22415 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 INGX-201ENST00000359239 846 ntBASIC16.21■□□□□ 0.19
USF1P22415 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 SLC25A1P2-201ENST00000430693 912 ntBASIC16.21■□□□□ 0.19
USF1P22415 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.21■□□□□ 0.19
USF1P22415 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.21■□□□□ 0.19
USF1P22415 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.21■□□□□ 0.19
USF1P22415 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.21■□□□□ 0.19
USF1P22415 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
USF1P22415 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.21■□□□□ 0.19
USF1P22415 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.21■□□□□ 0.19
USF1P22415 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.21■□□□□ 0.19
USF1P22415 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
USF1P22415 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
USF1P22415 AC096733.2-201ENST00000609937 1394 ntBASIC16.21■□□□□ 0.19
USF1P22415 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.21■□□□□ 0.19
USF1P22415 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF1P22415 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.21■□□□□ 0.19
USF1P22415 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
USF1P22415 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
USF1P22415 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
USF1P22415 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC16.2■□□□□ 0.18
USF1P22415 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC16.2■□□□□ 0.18
USF1P22415 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC16.2■□□□□ 0.18
USF1P22415 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
USF1P22415 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
USF1P22415 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 TCF3P1-201ENST00000423021 1937 ntBASIC16.2■□□□□ 0.18
USF1P22415 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.2■□□□□ 0.18
USF1P22415 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.2■□□□□ 0.18
USF1P22415 AC112907.3-201ENST00000577781 2400 ntBASIC16.2■□□□□ 0.18
USF1P22415 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.2■□□□□ 0.18
USF1P22415 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.2■□□□□ 0.18
USF1P22415 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
USF1P22415 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC16.2■□□□□ 0.18
USF1P22415 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF1P22415 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.19■□□□□ 0.18
USF1P22415 TMEM179-206ENST00000616017 1645 ntBASIC16.19■□□□□ 0.18
USF1P22415 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.19■□□□□ 0.18
USF1P22415 PCDHAC2-203ENST00000615316 3011 ntBASIC16.19■□□□□ 0.18
USF1P22415 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
USF1P22415 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.19■□□□□ 0.18
USF1P22415 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.19■□□□□ 0.18
USF1P22415 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
USF1P22415 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
USF1P22415 AC008040.2-201ENST00000461049 708 ntBASIC16.19■□□□□ 0.18
USF1P22415 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.19■□□□□ 0.18
USF1P22415 AC022616.7-201ENST00000525383 220 ntBASIC16.19■□□□□ 0.18
USF1P22415 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.19■□□□□ 0.18
USF1P22415 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.19■□□□□ 0.18
USF1P22415 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
USF1P22415 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
USF1P22415 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
USF1P22415 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC16.19■□□□□ 0.18
USF1P22415 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
USF1P22415 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
USF1P22415 KRT8P8-201ENST00000434750 1448 ntBASIC16.19■□□□□ 0.18
USF1P22415 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF1P22415 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
USF1P22415 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
USF1P22415 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
USF1P22415 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.18■□□□□ 0.18
USF1P22415 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms