Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.61■□□□□ 0.89
SIX2Q9NPC8 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.6■□□□□ 0.89
SIX2Q9NPC8 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 AL445675.2-201ENST00000620291 557 ntBASIC20.59■□□□□ 0.89
SIX2Q9NPC8 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SIX2Q9NPC8 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 AC004980.1-204ENST00000429707 299 ntBASIC20.58■□□□□ 0.89
SIX2Q9NPC8 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 C1QBPP2-201ENST00000528754 825 ntBASIC20.58■□□□□ 0.89
SIX2Q9NPC8 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX2Q9NPC8 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SIX2Q9NPC8 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX2Q9NPC8 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX2Q9NPC8 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX2Q9NPC8 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
SIX2Q9NPC8 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.88
SIX2Q9NPC8 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX2Q9NPC8 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX2Q9NPC8 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX2Q9NPC8 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 AL512353.2-201ENST00000448759 1962 ntBASIC20.57■□□□□ 0.88
SIX2Q9NPC8 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX2Q9NPC8 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms