Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDH9Q9HC56 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 AC239809.2-201ENST00000415381 517 ntBASIC19.81■□□□□ 0.76
PCDH9Q9HC56 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDH9Q9HC56 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 KRT18P16-201ENST00000510337 1294 ntBASIC19.8■□□□□ 0.76
PCDH9Q9HC56 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.8■□□□□ 0.76
PCDH9Q9HC56 NBPF21P-201ENST00000425093 1451 ntBASIC19.79■□□□□ 0.76
PCDH9Q9HC56 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 PRORSD1P-201ENST00000295112 541 ntBASIC19.79■□□□□ 0.76
PCDH9Q9HC56 KRASP1-201ENST00000407852 552 ntBASIC19.79■□□□□ 0.76
PCDH9Q9HC56 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 C1QBPP2-201ENST00000528754 825 ntBASIC19.79■□□□□ 0.76
PCDH9Q9HC56 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDH9Q9HC56 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PCDH9Q9HC56 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.78■□□□□ 0.76
PCDH9Q9HC56 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.78■□□□□ 0.76
PCDH9Q9HC56 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.78■□□□□ 0.76
PCDH9Q9HC56 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PCDH9Q9HC56 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDH9Q9HC56 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDH9Q9HC56 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDH9Q9HC56 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDH9Q9HC56 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
PCDH9Q9HC56 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
PCDH9Q9HC56 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms