Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 HPN-204ENST00000593305 2175 ntTSL 220.5■□□□□ 0.873e-12■■□□□ 11.9
DDX55Q8NHQ9 HPN-203ENST00000541345 1820 ntTSL 220.15■□□□□ 0.823e-12■■□□□ 11.9
DDX55Q8NHQ9 ENTPD6-214ENST00000463734 639 ntTSL 216.78■□□□□ 0.286e-7■■□□□ 11.9
DDX55Q8NHQ9 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC33.1■■■□□ 2.891e-6■■□□□ 11.9
DDX55Q8NHQ9 ZFAND2B-217ENST00000475533 971 ntTSL 515.77■□□□□ 0.121e-6■■□□□ 11.9
DDX55Q8NHQ9 BAZ2A-201ENST00000379441 8831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.326e-7■■□□□ 11.9
DDX55Q8NHQ9 BAZ2A-214ENST00000551812 8600 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.556e-7■■□□□ 11.9
DDX55Q8NHQ9 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.154e-8■■□□□ 11.9
DDX55Q8NHQ9 PXDC1-203ENST00000477592 1697 ntTSL 520.36■□□□□ 0.854e-8■■□□□ 11.9
DDX55Q8NHQ9 PXDC1-201ENST00000380277 1538 ntTSL 317.88■□□□□ 0.454e-8■■□□□ 11.9
DDX55Q8NHQ9 HSP90AA1-204ENST00000554401 1710 ntTSL 1 (best)10.33□□□□□ -0.763e-6■■□□□ 11.9
DDX55Q8NHQ9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC22.51■■□□□ 1.191e-14■■□□□ 11.9
DDX55Q8NHQ9 FBRS-206ENST00000494101 2782 ntTSL 216.49■□□□□ 0.231e-14■■□□□ 11.9
DDX55Q8NHQ9 FBRS-208ENST00000543786 2890 ntTSL 215.17■□□□□ 0.021e-14■■□□□ 11.9
DDX55Q8NHQ9 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.011e-14■■□□□ 11.9
DDX55Q8NHQ9 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.085e-7■■□□□ 11.9
DDX55Q8NHQ9 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC24.17■■□□□ 1.465e-8■■□□□ 11.9
DDX55Q8NHQ9 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.315e-8■■□□□ 11.9
DDX55Q8NHQ9 RNPEP-206ENST00000471105 2093 ntTSL 1 (best)14.58□□□□□ -0.085e-8■■□□□ 11.9
DDX55Q8NHQ9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.84■□□□□ 0.618e-7■■□□□ 11.9
DDX55Q8NHQ9 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC16.04■□□□□ 0.168e-7■■□□□ 11.9
DDX55Q8NHQ9 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.88■□□□□ 0.138e-7■■□□□ 11.9
DDX55Q8NHQ9 TSPO-205ENST00000472378 495 ntTSL 220.27■□□□□ 0.841e-6■■□□□ 11.9
DDX55Q8NHQ9 EHMT2-206ENST00000461880 1825 ntTSL 516.16■□□□□ 0.183e-6■■□□□ 11.9
DDX55Q8NHQ9 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.033e-6■■□□□ 11.9
DDX55Q8NHQ9 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.023e-6■■□□□ 11.9
DDX55Q8NHQ9 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.033e-6■■□□□ 11.9
DDX55Q8NHQ9 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.053e-6■■□□□ 11.9
DDX55Q8NHQ9 EHMT2-210ENST00000478491 1517 ntTSL 514.41□□□□□ -0.13e-6■■□□□ 11.9
DDX55Q8NHQ9 EHMT2-211ENST00000480912 3940 ntTSL 511.54□□□□□ -0.563e-6■■□□□ 11.9
DDX55Q8NHQ9 EHMT2-212ENST00000494816 3036 ntTSL 511.47□□□□□ -0.573e-6■■□□□ 11.9
DDX55Q8NHQ9 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.231e-6■■□□□ 11.9
DDX55Q8NHQ9 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.012e-7■■□□□ 11.8
DDX55Q8NHQ9 PDLIM7-208ENST00000493815 1686 ntTSL 1 (best)21.35■■□□□ 1.012e-7■■□□□ 11.8
DDX55Q8NHQ9 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.82e-7■■□□□ 11.8
DDX55Q8NHQ9 PDLIM7-207ENST00000486828 1904 ntTSL 1 (best)19.22■□□□□ 0.672e-7■■□□□ 11.8
DDX55Q8NHQ9 PUM2-203ENST00000361078 6251 ntTSL 2 BASIC13.25□□□□□ -0.296e-13■■□□□ 11.8
DDX55Q8NHQ9 MYL6-205ENST00000546845 452 ntTSL 311.25□□□□□ -0.611e-14■■□□□ 11.8
DDX55Q8NHQ9 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC7.24□□□□□ -1.256e-13■■□□□ 11.8
DDX55Q8NHQ9 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.326e-13■■□□□ 11.8
DDX55Q8NHQ9 PUM2-209ENST00000440577 4352 ntTSL 1 (best)6.54□□□□□ -1.366e-13■■□□□ 11.8
DDX55Q8NHQ9 L1CAM-212ENST00000464967 593 ntTSL 216.45■□□□□ 0.224e-9■■□□□ 11.8
DDX55Q8NHQ9 MRPL28-204ENST00000441883 800 ntTSL 533.55■■■□□ 2.966e-8■■□□□ 11.8
DDX55Q8NHQ9 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.049e-7■■□□□ 11.8
DDX55Q8NHQ9 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC14.49□□□□□ -0.099e-7■■□□□ 11.8
DDX55Q8NHQ9 FAAP100-203ENST00000443656 3822 ntTSL 1 (best)13.63□□□□□ -0.239e-7■■□□□ 11.8
DDX55Q8NHQ9 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC27.97■■■□□ 2.077e-12■■□□□ 11.8
DDX55Q8NHQ9 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC27.47■■□□□ 1.997e-12■■□□□ 11.8
DDX55Q8NHQ9 PQLC1-206ENST00000474967 2319 ntTSL 520.83■□□□□ 0.937e-12■■□□□ 11.8
DDX55Q8NHQ9 PQLC1-201ENST00000351365 2414 ntTSL 218.99■□□□□ 0.637e-12■■□□□ 11.8
DDX55Q8NHQ9 PQLC1-204ENST00000466449 2887 ntTSL 217.6■□□□□ 0.417e-12■■□□□ 11.8
DDX55Q8NHQ9 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.681e-6■■□□□ 11.8
DDX55Q8NHQ9 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC14.41□□□□□ -0.15e-11■■□□□ 11.8
DDX55Q8NHQ9 YPEL2-201ENST00000312655 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.343e-10■■□□□ 11.8
DDX55Q8NHQ9 MTSS1-205ENST00000518547 4944 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.53e-10■■□□□ 11.8
DDX55Q8NHQ9 MTSS1-202ENST00000378017 4458 ntTSL 1 (best) BASIC11.03□□□□□ -0.643e-10■■□□□ 11.8
DDX55Q8NHQ9 MTSS1-210ENST00000520771 3548 ntTSL 210.36□□□□□ -0.753e-10■■□□□ 11.8
DDX55Q8NHQ9 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.615e-7■■□□□ 11.8
DDX55Q8NHQ9 STK25-224ENST00000472181 464 ntTSL 324.89■■□□□ 1.585e-7■■□□□ 11.8
DDX55Q8NHQ9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC23.82■■□□□ 1.45e-7■■□□□ 11.8
DDX55Q8NHQ9 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.79■■□□□ 1.245e-7■■□□□ 11.8
DDX55Q8NHQ9 STK25-230ENST00000494699 797 ntTSL 221■□□□□ 0.955e-7■■□□□ 11.8
DDX55Q8NHQ9 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.775e-7■■□□□ 11.8
DDX55Q8NHQ9 STK25-228ENST00000487962 2024 ntTSL 219■□□□□ 0.635e-7■■□□□ 11.8
DDX55Q8NHQ9 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.635e-7■■□□□ 11.8
DDX55Q8NHQ9 STK25-235ENST00000543554 2556 ntTSL 2 BASIC15.69■□□□□ 0.15e-7■■□□□ 11.8
DDX55Q8NHQ9 TFR2-204ENST00000462090 1844 ntTSL 520.3■□□□□ 0.843e-17■■□□□ 11.8
DDX55Q8NHQ9 TFR2-212ENST00000476304 2421 ntTSL 519.01■□□□□ 0.633e-17■■□□□ 11.8
DDX55Q8NHQ9 TFR2-213ENST00000490084 2196 ntTSL 218.26■□□□□ 0.513e-17■■□□□ 11.8
DDX55Q8NHQ9 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.03■□□□□ 0.323e-17■■□□□ 11.8
DDX55Q8NHQ9 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.013e-17■■□□□ 11.8
DDX55Q8NHQ9 TFR2-206ENST00000465294 2763 ntTSL 214.27□□□□□ -0.123e-17■■□□□ 11.8
DDX55Q8NHQ9 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.153e-17■■□□□ 11.8
DDX55Q8NHQ9 SLC25A10-206ENST00000573246 898 ntTSL 316.71■□□□□ 0.273e-15■■□□□ 11.8
DDX55Q8NHQ9 TRMT2A-215ENST00000487378 654 ntTSL 218.51■□□□□ 0.551e-8■■□□□ 11.8
DDX55Q8NHQ9 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.354e-34■■□□□ 11.8
DDX55Q8NHQ9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.982e-7■■□□□ 11.8
DDX55Q8NHQ9 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.382e-7■■□□□ 11.8
DDX55Q8NHQ9 HNRNPA3-202ENST00000411529 5688 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.612e-7■■□□□ 11.8
DDX55Q8NHQ9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC24.43■■□□□ 1.57e-19■■□□□ 11.8
DDX55Q8NHQ9 PTPA-216ENST00000432651 857 ntTSL 2 BASIC23.08■■□□□ 1.292e-12■■□□□ 11.8
DDX55Q8NHQ9 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC19.47■□□□□ 0.717e-19■■□□□ 11.8
DDX55Q8NHQ9 PTPA-218ENST00000435132 618 ntTSL 2 BASIC18.18■□□□□ 0.57e-19■■□□□ 11.8
DDX55Q8NHQ9 PTPA-217ENST00000434095 870 ntTSL 2 BASIC17.96■□□□□ 0.477e-19■■□□□ 11.8
DDX55Q8NHQ9 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.532e-7■■□□□ 11.8
DDX55Q8NHQ9 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.124e-39■■□□□ 11.8
DDX55Q8NHQ9 REEP6-203ENST00000395484 611 ntTSL 514.44□□□□□ -0.14e-39■■□□□ 11.8
DDX55Q8NHQ9 ACADVL-218ENST00000579391 341 ntTSL 219.25■□□□□ 0.676e-10■■□□□ 11.8
DDX55Q8NHQ9 ACADVL-231ENST00000582450 294 ntTSL 217.67■□□□□ 0.426e-10■■□□□ 11.8
DDX55Q8NHQ9 PFDN5-207ENST00000549759 559 ntTSL 315.35■□□□□ 0.052e-11■■□□□ 11.8
DDX55Q8NHQ9 HSP90AA1-210ENST00000560130 488 ntTSL 25.17□□□□□ -1.584e-6■■□□□ 11.8
DDX55Q8NHQ9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.811e-16■■□□□ 11.8
DDX55Q8NHQ9 GLS-206ENST00000412247 693 ntTSL 36.43□□□□□ -1.381e-16■■□□□ 11.8
DDX55Q8NHQ9 GLS-208ENST00000457316 821 ntTSL 46□□□□□ -1.451e-16■■□□□ 11.8
DDX55Q8NHQ9 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.25□□□□□ -1.571e-16■■□□□ 11.8
DDX55Q8NHQ9 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.221e-8■■□□□ 11.8
DDX55Q8NHQ9 SLC25A39-215ENST00000592372 867 ntTSL 320.48■□□□□ 0.872e-6■■□□□ 11.8
DDX55Q8NHQ9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.12e-21■■□□□ 11.8
DDX55Q8NHQ9 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.545e-57■■□□□ 11.8
DDX55Q8NHQ9 PRMT1-216ENST00000530361 866 ntTSL 321.63■■□□□ 1.057e-7■■□□□ 11.8
Retrieved 100 of 15,504 protein–RNA pairs in 77.9 ms