Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC65Q8IXS2 AL161938.1-201ENST00000569833 2180 ntBASIC21.29■■□□□ 1
CCDC65Q8IXS2 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC65Q8IXS2 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC65Q8IXS2 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC65Q8IXS2 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC65Q8IXS2 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC65Q8IXS2 GCSHP5-201ENST00000443090 522 ntBASIC21.29■■□□□ 1
CCDC65Q8IXS2 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC65Q8IXS2 RPS2P4-201ENST00000476944 856 ntBASIC21.29■■□□□ 1
CCDC65Q8IXS2 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC65Q8IXS2 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC65Q8IXS2 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC65Q8IXS2 AP000974.1-201ENST00000623909 2387 ntBASIC21.29■■□□□ 1
CCDC65Q8IXS2 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.29■■□□□ 1
CCDC65Q8IXS2 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
CCDC65Q8IXS2 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.28■■□□□ 1
CCDC65Q8IXS2 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
CCDC65Q8IXS2 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC65Q8IXS2 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.28■■□□□ 1
CCDC65Q8IXS2 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC65Q8IXS2 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC65Q8IXS2 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC65Q8IXS2 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CCDC65Q8IXS2 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.28■■□□□ 1
CCDC65Q8IXS2 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC65Q8IXS2 TSPY21P-201ENST00000433481 731 ntBASIC21.28■■□□□ 1
CCDC65Q8IXS2 AL158047.1-201ENST00000445918 881 ntBASIC21.28■■□□□ 1
CCDC65Q8IXS2 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC65Q8IXS2 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.28■■□□□ 1
CCDC65Q8IXS2 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.28■■□□□ 1
CCDC65Q8IXS2 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.28■■□□□ 1
CCDC65Q8IXS2 AF186192.3-201ENST00000583427 947 ntBASIC21.28■■□□□ 1
CCDC65Q8IXS2 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC65Q8IXS2 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC65Q8IXS2 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC65Q8IXS2 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.28■■□□□ 1
CCDC65Q8IXS2 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC65Q8IXS2 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC65Q8IXS2 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.28■■□□□ 1
CCDC65Q8IXS2 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.28■■□□□ 1
CCDC65Q8IXS2 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC65Q8IXS2 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 AC004980.1-204ENST00000429707 299 ntBASIC21.27■■□□□ 1
CCDC65Q8IXS2 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 Z85996.1-201ENST00000494644 937 ntBASIC21.27■■□□□ 1
CCDC65Q8IXS2 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.27■■□□□ 1
CCDC65Q8IXS2 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 AC087289.5-201ENST00000586076 3175 ntBASIC21.27■■□□□ 1
CCDC65Q8IXS2 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC65Q8IXS2 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.27■□□□□ 0.99
CCDC65Q8IXS2 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.27■□□□□ 0.99
CCDC65Q8IXS2 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC65Q8IXS2 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC65Q8IXS2 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC65Q8IXS2 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC65Q8IXS2 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC65Q8IXS2 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC65Q8IXS2 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC65Q8IXS2 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CCDC65Q8IXS2 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC65Q8IXS2 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC65Q8IXS2 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC65Q8IXS2 KRT8P41-201ENST00000533985 1514 ntBASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms