Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC22.18■■□□□ 1.14
HMGCS2P54868 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGCS2P54868 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGCS2P54868 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
HMGCS2P54868 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGCS2P54868 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGCS2P54868 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGCS2P54868 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGCS2P54868 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC22.17■■□□□ 1.14
HMGCS2P54868 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGCS2P54868 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC22.17■■□□□ 1.14
HMGCS2P54868 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC22.17■■□□□ 1.14
HMGCS2P54868 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC22.17■■□□□ 1.14
HMGCS2P54868 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGCS2P54868 NDUFV2-AS1-203ENST00000608008 779 ntBASIC22.17■■□□□ 1.14
HMGCS2P54868 CLN6-214ENST00000636314 442 ntTSL 3 BASIC22.17■■□□□ 1.14
HMGCS2P54868 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
HMGCS2P54868 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
HMGCS2P54868 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGCS2P54868 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGCS2P54868 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGCS2P54868 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGCS2P54868 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
HMGCS2P54868 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
HMGCS2P54868 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGCS2P54868 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
HMGCS2P54868 TPM4P1-201ENST00000436100 807 ntBASIC22.16■■□□□ 1.14
HMGCS2P54868 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC22.16■■□□□ 1.14
HMGCS2P54868 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC22.16■■□□□ 1.14
HMGCS2P54868 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGCS2P54868 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC22.16■■□□□ 1.14
HMGCS2P54868 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
HMGCS2P54868 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC22.16■■□□□ 1.14
HMGCS2P54868 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGCS2P54868 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGCS2P54868 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGCS2P54868 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
HMGCS2P54868 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 SDHAP1-207ENST00000440850 2000 ntBASIC22.15■■□□□ 1.14
HMGCS2P54868 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC22.15■■□□□ 1.14
HMGCS2P54868 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC22.15■■□□□ 1.14
HMGCS2P54868 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC22.15■■□□□ 1.14
HMGCS2P54868 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC22.15■■□□□ 1.14
HMGCS2P54868 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC22.15■■□□□ 1.14
HMGCS2P54868 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
HMGCS2P54868 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC22.14■■□□□ 1.14
HMGCS2P54868 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
HMGCS2P54868 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
HMGCS2P54868 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGCS2P54868 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGCS2P54868 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
HMGCS2P54868 AC012313.10-201ENST00000623509 926 ntBASIC22.14■■□□□ 1.13
HMGCS2P54868 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGCS2P54868 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
HMGCS2P54868 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
HMGCS2P54868 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGCS2P54868 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGCS2P54868 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGCS2P54868 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
HMGCS2P54868 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HMGCS2P54868 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HMGCS2P54868 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGCS2P54868 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGCS2P54868 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
HMGCS2P54868 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGCS2P54868 HBZP1-201ENST00000354915 429 ntBASIC22.13■■□□□ 1.13
HMGCS2P54868 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HMGCS2P54868 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HMGCS2P54868 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC22.13■■□□□ 1.13
HMGCS2P54868 PP7080-204ENST00000510714 601 ntTSL 3 BASIC22.13■■□□□ 1.13
HMGCS2P54868 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC22.13■■□□□ 1.13
HMGCS2P54868 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
HMGCS2P54868 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGCS2P54868 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms