Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
CLCN3P51790 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLCN3P51790 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLCN3P51790 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLCN3P51790 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLCN3P51790 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CLCN3P51790 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.12■□□□□ 0.97
CLCN3P51790 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.11■□□□□ 0.97
CLCN3P51790 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCN3P51790 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCN3P51790 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.11■□□□□ 0.97
CLCN3P51790 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCN3P51790 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CLCN3P51790 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCN3P51790 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CLCN3P51790 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCN3P51790 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.11■□□□□ 0.97
CLCN3P51790 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLCN3P51790 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.11■□□□□ 0.97
CLCN3P51790 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.11■□□□□ 0.97
CLCN3P51790 NTF6B-201ENST00000591913 560 ntBASIC21.11■□□□□ 0.97
CLCN3P51790 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.11■□□□□ 0.97
CLCN3P51790 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.11■□□□□ 0.97
CLCN3P51790 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLCN3P51790 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CLCN3P51790 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCN3P51790 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCN3P51790 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CLCN3P51790 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCN3P51790 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCN3P51790 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC21.11■□□□□ 0.97
CLCN3P51790 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCN3P51790 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.11■□□□□ 0.97
CLCN3P51790 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLCN3P51790 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.1■□□□□ 0.97
CLCN3P51790 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.1■□□□□ 0.97
CLCN3P51790 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
CLCN3P51790 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CLCN3P51790 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLCN3P51790 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.1■□□□□ 0.97
CLCN3P51790 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLCN3P51790 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.1■□□□□ 0.97
CLCN3P51790 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLCN3P51790 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLCN3P51790 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLCN3P51790 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLCN3P51790 AK4P3-201ENST00000418260 669 ntBASIC21.1■□□□□ 0.97
CLCN3P51790 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.1■□□□□ 0.97
CLCN3P51790 AC139887.4-201ENST00000607877 719 ntBASIC21.1■□□□□ 0.97
CLCN3P51790 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLCN3P51790 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC21.1■□□□□ 0.97
CLCN3P51790 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLCN3P51790 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLCN3P51790 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.1■□□□□ 0.97
CLCN3P51790 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.09■□□□□ 0.97
CLCN3P51790 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
CLCN3P51790 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC21.09■□□□□ 0.97
CLCN3P51790 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.09■□□□□ 0.97
CLCN3P51790 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.09■□□□□ 0.97
CLCN3P51790 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.09■□□□□ 0.97
CLCN3P51790 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.09■□□□□ 0.97
CLCN3P51790 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.09■□□□□ 0.97
CLCN3P51790 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.09■□□□□ 0.97
CLCN3P51790 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCN3P51790 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
CLCN3P51790 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
CLCN3P51790 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.09■□□□□ 0.97
CLCN3P51790 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.08■□□□□ 0.97
CLCN3P51790 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLCN3P51790 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
CLCN3P51790 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
CLCN3P51790 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
CLCN3P51790 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLCN3P51790 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLCN3P51790 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CLCN3P51790 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.08■□□□□ 0.97
CLCN3P51790 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLCN3P51790 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.08■□□□□ 0.97
CLCN3P51790 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
CLCN3P51790 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLCN3P51790 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLCN3P51790 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLCN3P51790 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
CLCN3P51790 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLCN3P51790 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms