Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
MSX2P35548 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 SDHAP1-207ENST00000440850 2000 ntBASIC18.32■□□□□ 0.52
MSX2P35548 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
MSX2P35548 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX2P35548 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
MSX2P35548 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.31■□□□□ 0.52
MSX2P35548 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.31■□□□□ 0.52
MSX2P35548 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
MSX2P35548 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.31■□□□□ 0.52
MSX2P35548 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.31■□□□□ 0.52
MSX2P35548 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
MSX2P35548 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.31■□□□□ 0.52
MSX2P35548 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.31■□□□□ 0.52
MSX2P35548 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
MSX2P35548 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.31■□□□□ 0.52
MSX2P35548 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
MSX2P35548 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX2P35548 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
MSX2P35548 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.31■□□□□ 0.52
MSX2P35548 IRX1P1-201ENST00000438849 1838 ntBASIC18.3■□□□□ 0.52
MSX2P35548 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
MSX2P35548 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.3■□□□□ 0.52
MSX2P35548 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX2P35548 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
MSX2P35548 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX2P35548 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MSX2P35548 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
MSX2P35548 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
MSX2P35548 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.3■□□□□ 0.52
MSX2P35548 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MSX2P35548 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX2P35548 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX2P35548 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX2P35548 AL355472.2-201ENST00000422958 438 ntBASIC18.3■□□□□ 0.52
MSX2P35548 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.3■□□□□ 0.52
MSX2P35548 RARRES2P4-201ENST00000514074 484 ntBASIC18.3■□□□□ 0.52
MSX2P35548 AL162412.1-201ENST00000567129 965 ntBASIC18.3■□□□□ 0.52
MSX2P35548 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.3■□□□□ 0.52
MSX2P35548 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.3■□□□□ 0.52
MSX2P35548 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
MSX2P35548 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.3■□□□□ 0.52
MSX2P35548 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.3■□□□□ 0.52
MSX2P35548 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.3■□□□□ 0.52
MSX2P35548 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
MSX2P35548 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX2P35548 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX2P35548 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX2P35548 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
MSX2P35548 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
MSX2P35548 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.3■□□□□ 0.52
MSX2P35548 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX2P35548 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.3■□□□□ 0.52
MSX2P35548 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.29■□□□□ 0.52
MSX2P35548 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.29■□□□□ 0.52
MSX2P35548 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.29■□□□□ 0.52
MSX2P35548 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.29■□□□□ 0.52
MSX2P35548 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
MSX2P35548 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.29■□□□□ 0.52
MSX2P35548 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
MSX2P35548 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
MSX2P35548 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX2P35548 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.29■□□□□ 0.52
MSX2P35548 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
MSX2P35548 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms