Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
XRCC1P18887 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
XRCC1P18887 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
XRCC1P18887 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC1P18887 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC1P18887 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.13■□□□□ 0.65
XRCC1P18887 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC1P18887 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC1P18887 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC1P18887 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.13■□□□□ 0.65
XRCC1P18887 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.13■□□□□ 0.65
XRCC1P18887 AP002982.1-201ENST00000492365 877 ntBASIC19.13■□□□□ 0.65
XRCC1P18887 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.13■□□□□ 0.65
XRCC1P18887 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.13■□□□□ 0.65
XRCC1P18887 CD177P1-201ENST00000606252 935 ntBASIC19.13■□□□□ 0.65
XRCC1P18887 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
XRCC1P18887 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.13■□□□□ 0.65
XRCC1P18887 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.13■□□□□ 0.65
XRCC1P18887 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC1P18887 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.13■□□□□ 0.65
XRCC1P18887 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.13■□□□□ 0.65
XRCC1P18887 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC1P18887 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC1P18887 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.13■□□□□ 0.65
XRCC1P18887 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
XRCC1P18887 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC1P18887 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC1P18887 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC1P18887 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.13■□□□□ 0.65
XRCC1P18887 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.12■□□□□ 0.65
XRCC1P18887 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.12■□□□□ 0.65
XRCC1P18887 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 AP001271.2-201ENST00000624018 1556 ntBASIC19.12■□□□□ 0.65
XRCC1P18887 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
XRCC1P18887 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.12■□□□□ 0.65
XRCC1P18887 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.12■□□□□ 0.65
XRCC1P18887 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC1P18887 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC1P18887 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.11■□□□□ 0.65
XRCC1P18887 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.11■□□□□ 0.65
XRCC1P18887 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.11■□□□□ 0.65
XRCC1P18887 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.11■□□□□ 0.65
XRCC1P18887 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC1P18887 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC1P18887 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC1P18887 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.11■□□□□ 0.65
XRCC1P18887 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC1P18887 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
XRCC1P18887 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC1P18887 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC1P18887 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.11■□□□□ 0.65
XRCC1P18887 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.11■□□□□ 0.65
XRCC1P18887 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC1P18887 TUBB8P6-201ENST00000436895 1288 ntBASIC19.11■□□□□ 0.65
XRCC1P18887 KSR1P1-201ENST00000446298 240 ntBASIC19.11■□□□□ 0.65
XRCC1P18887 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.11■□□□□ 0.65
XRCC1P18887 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.11■□□□□ 0.65
XRCC1P18887 C1QL1P1-201ENST00000568105 661 ntBASIC19.11■□□□□ 0.65
XRCC1P18887 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.11■□□□□ 0.65
XRCC1P18887 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.11■□□□□ 0.65
XRCC1P18887 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
XRCC1P18887 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
XRCC1P18887 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.11■□□□□ 0.65
XRCC1P18887 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.11■□□□□ 0.65
XRCC1P18887 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
XRCC1P18887 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC1P18887 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC1P18887 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC1P18887 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC1P18887 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.1■□□□□ 0.65
XRCC1P18887 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC1P18887 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC1P18887 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC1P18887 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC1P18887 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
XRCC1P18887 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.1■□□□□ 0.65
XRCC1P18887 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.1■□□□□ 0.65
XRCC1P18887 NIFKP9-201ENST00000419265 221 ntBASIC19.1■□□□□ 0.65
XRCC1P18887 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.1■□□□□ 0.65
XRCC1P18887 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC1P18887 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC1P18887 AC026471.5-201ENST00000615068 467 ntBASIC19.1■□□□□ 0.65
XRCC1P18887 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.1■□□□□ 0.65
XRCC1P18887 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms