Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 VRK3-209ENST00000594948 1847 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.223e-6■■■■■ 137.9
SF3B1O75533 SNCG-202ENST00000372017 701 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.233e-6■■■■■ 137.9
SF3B1O75533 ZNF197-204ENST00000383745 2935 ntTSL 1 (best) BASIC13.63□□□□□ -0.233e-6■■■■■ 137.9
SF3B1O75533 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.233e-6■■■■■ 137.9
SF3B1O75533 CEP70-208ENST00000474781 2028 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.233e-6■■■■■ 137.9
SF3B1O75533 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC13.62□□□□□ -0.233e-6■■■■■ 137.9
SF3B1O75533 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.233e-6■■■■■ 137.9
SF3B1O75533 PHB-215ENST00000617874 1908 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.233e-6■■■■■ 137.9
SF3B1O75533 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC13.6□□□□□ -0.233e-6■■■■■ 137.9
SF3B1O75533 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 OBSCN-213ENST00000636476 7835 ntTSL 1 (best)13.57□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 CYFIP1-211ENST00000619348 3471 ntTSL 1 (best)13.57□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 KIAA0319L-208ENST00000469892 889 ntTSL 513.57□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 LMBR1L-201ENST00000267102 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 ELMO2-201ENST00000290246 3669 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 RASGRP4-212ENST00000589358 2634 ntTSL 513.56□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 LMBR1L-218ENST00000551143 578 ntTSL 313.56□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 COX5B-204ENST00000494306 738 ntTSL 213.55□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 ZNF799-202ENST00000430385 2583 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC13.54□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 DYRK4-214ENST00000543431 2068 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.243e-6■■■■■ 137.9
SF3B1O75533 RHOH-221ENST00000615577 2227 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 RHOH-223ENST00000619474 2230 ntAPPRIS P1 TSL 4 BASIC13.52□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 TFAM-201ENST00000373895 973 ntTSL 2 BASIC13.52□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC13.5□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 SNCA-208ENST00000505199 411 ntTSL 1 (best) BASIC13.5□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 ZNF197-206ENST00000412641 546 ntTSL 213.5□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 ATG9B-211ENST00000617967 2777 ntTSL 1 (best)13.49□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC13.49□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 MPHOSPH10-201ENST00000244230 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 AC109635.4-201ENST00000636653 1005 ntTSL 1 (best) BASIC13.48□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 GTF3C5-207ENST00000440319 920 ntTSL 513.47□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 TRIAP1-202ENST00000546954 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 PLEKHM1-207ENST00000581448 3292 ntTSL 1 (best)13.46□□□□□ -0.253e-6■■■■■ 137.9
SF3B1O75533 RASGRP4-209ENST00000588404 2749 ntTSL 513.45□□□□□ -0.263e-6■■■■■ 137.9
SF3B1O75533 TMTC4-201ENST00000328767 2101 ntTSL 2 BASIC13.45□□□□□ -0.263e-6■■■■■ 137.9
SF3B1O75533 CORO1B-209ENST00000616321 4464 ntTSL 213.44□□□□□ -0.263e-6■■■■■ 137.9
SF3B1O75533 LMAN2L-203ENST00000434524 2410 ntTSL 513.42□□□□□ -0.263e-6■■■■■ 137.9
SF3B1O75533 RASGRP4-213ENST00000589474 2592 ntTSL 513.42□□□□□ -0.263e-6■■■■■ 137.9
SF3B1O75533 DYRK4-209ENST00000539701 945 ntTSL 513.39□□□□□ -0.273e-6■■■■■ 137.9
SF3B1O75533 PDE1B-205ENST00000548855 4734 ntTSL 1 (best)13.39□□□□□ -0.273e-6■■■■■ 137.9
SF3B1O75533 L3MBTL2-207ENST00000479978 5875 ntTSL 213.39□□□□□ -0.273e-6■■■■■ 137.9
SF3B1O75533 FANCA-210ENST00000563318 605 ntTSL 513.39□□□□□ -0.272e-11■■■■■ 137.9
SF3B1O75533 BARD1-214ENST00000620057 1456 ntTSL 1 (best) BASIC13.38□□□□□ -0.273e-6■■■■■ 137.9
SF3B1O75533 FOXN3-219ENST00000615335 2421 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.273e-6■■■■■ 137.9
SF3B1O75533 CENPT-231ENST00000569019 535 ntTSL 413.38□□□□□ -0.273e-6■■■■■ 137.9
SF3B1O75533 CCDC97-201ENST00000269967 3322 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.273e-6■■■■■ 137.9
SF3B1O75533 PHB-214ENST00000614445 1952 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.273e-6■■■■■ 137.9
SF3B1O75533 SERPINF1-212ENST00000577053 731 ntTSL 513.34□□□□□ -0.273e-6■■■■■ 137.9
SF3B1O75533 SERPINF1-210ENST00000573770 789 ntTSL 313.34□□□□□ -0.273e-6■■■■■ 137.9
SF3B1O75533 GGCX-204ENST00000428479 533 ntTSL 413.34□□□□□ -0.273e-6■■■■■ 137.9
SF3B1O75533 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.273e-6■■■■■ 137.9
SF3B1O75533 SEPT9-213ENST00000586433 569 ntTSL 413.33□□□□□ -0.283e-6■■■■■ 137.9
SF3B1O75533 ZBTB20-211ENST00000471418 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.283e-6■■■■■ 137.9
SF3B1O75533 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.283e-6■■■■■ 137.9
SF3B1O75533 TMEM106B-202ENST00000396668 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.283e-6■■■■■ 137.9
SF3B1O75533 SELENOS-207ENST00000531964 764 ntTSL 3 BASIC13.31□□□□□ -0.283e-6■■■■■ 137.9
SF3B1O75533 IMPDH2-202ENST00000429182 1469 ntTSL 513.3□□□□□ -0.283e-6■■■■■ 137.9
SF3B1O75533 REC8-201ENST00000557806 635 ntTSL 413.3□□□□□ -0.283e-6■■■■■ 137.9
SF3B1O75533 ENTPD1-AS1-210ENST00000452942 864 ntTSL 3 BASIC13.3□□□□□ -0.283e-6■■■■■ 137.9
SF3B1O75533 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.283e-6■■■■■ 137.9
SF3B1O75533 OBSCN-207ENST00000483539 4779 ntTSL 513.27□□□□□ -0.283e-6■■■■■ 137.9
SF3B1O75533 FLJ30679-201ENST00000624773 1980 ntBASIC13.27□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 DCLRE1C-208ENST00000378258 2463 ntTSL 1 (best) BASIC13.27□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 SETD1B-204ENST00000619791 5901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 ZMPSTE24-201ENST00000372759 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.296e-6■■■■■ 137.9
SF3B1O75533 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 SIL1-209ENST00000507002 581 ntTSL 313.24□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 TRAPPC4-209ENST00000528230 583 ntTSL 3 BASIC13.24□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 ISCU-210ENST00000544493 543 ntTSL 313.24□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 DYRK4-207ENST00000539309 989 ntTSL 513.24□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 ABCB8-209ENST00000471796 535 ntTSL 413.24□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 SPDL1-206ENST00000507232 2144 ntTSL 1 (best)13.23□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 BTBD3-204ENST00000405977 5137 ntAPPRIS P4 TSL 5 BASIC13.23□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 IL4R-218ENST00000568746 2900 ntTSL 213.23□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 ISCU-211ENST00000545932 3685 ntTSL 213.22□□□□□ -0.293e-6■■■■■ 137.9
SF3B1O75533 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.33e-6■■■■■ 137.9
SF3B1O75533 VPS51-210ENST00000531146 594 ntTSL 213.2□□□□□ -0.33e-6■■■■■ 137.9
SF3B1O75533 RFC5-208ENST00000537315 820 ntTSL 413.19□□□□□ -0.33e-6■■■■■ 137.9
SF3B1O75533 BID-211ENST00000611040 419 ntTSL 1 (best) BASIC13.19□□□□□ -0.33e-6■■■■■ 137.9
SF3B1O75533 TALDO1-209ENST00000533796 503 ntTSL 213.19□□□□□ -0.32e-11■■■■■ 137.9
SF3B1O75533 ZNF335-203ENST00000476822 1370 ntTSL 213.19□□□□□ -0.33e-6■■■■■ 137.9
SF3B1O75533 ZMIZ1-202ENST00000446377 6686 ntTSL 5 BASIC13.18□□□□□ -0.33e-6■■■■■ 137.9
SF3B1O75533 VRK3-202ENST00000377011 1749 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.33e-6■■■■■ 137.9
SF3B1O75533 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.33e-6■■■■■ 137.9
SF3B1O75533 ZNF814-210ENST00000597348 757 ntTSL 513.17□□□□□ -0.33e-6■■■■■ 137.9
SF3B1O75533 AC022568.1-202ENST00000519828 306 ntTSL 313.17□□□□□ -0.33e-6■■■■■ 137.9
SF3B1O75533 SERPINF1-211ENST00000576406 795 ntTSL 313.15□□□□□ -0.33e-6■■■■■ 137.9
SF3B1O75533 C1orf61-214ENST00000476966 2697 ntTSL 213.14□□□□□ -0.313e-6■■■■■ 137.9
SF3B1O75533 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.313e-6■■■■■ 137.9
SF3B1O75533 TSC22D3-206ENST00000372397 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.313e-6■■■■■ 137.9
SF3B1O75533 PIR-204ENST00000476381 904 ntTSL 313.09□□□□□ -0.313e-6■■■■■ 137.9
Retrieved 100 of 46,956 protein–RNA pairs in 1243.2 ms