Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGN4O00479 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGN4O00479 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.87■□□□□ 0.45
HMGN4O00479 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
HMGN4O00479 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.86■□□□□ 0.45
HMGN4O00479 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGN4O00479 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.86■□□□□ 0.45
HMGN4O00479 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGN4O00479 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGN4O00479 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGN4O00479 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
HMGN4O00479 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.86■□□□□ 0.45
HMGN4O00479 AC004264.1-201ENST00000608354 794 ntBASIC17.86■□□□□ 0.45
HMGN4O00479 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.86■□□□□ 0.45
HMGN4O00479 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGN4O00479 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGN4O00479 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGN4O00479 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGN4O00479 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGN4O00479 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGN4O00479 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGN4O00479 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGN4O00479 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGN4O00479 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGN4O00479 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGN4O00479 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGN4O00479 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGN4O00479 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGN4O00479 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGN4O00479 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
HMGN4O00479 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.85■□□□□ 0.45
HMGN4O00479 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.85■□□□□ 0.45
HMGN4O00479 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.85■□□□□ 0.45
HMGN4O00479 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGN4O00479 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGN4O00479 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HMGN4O00479 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGN4O00479 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGN4O00479 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
HMGN4O00479 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGN4O00479 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGN4O00479 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGN4O00479 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGN4O00479 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGN4O00479 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGN4O00479 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
HMGN4O00479 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGN4O00479 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGN4O00479 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGN4O00479 AL160286.2-201ENST00000567150 934 ntBASIC17.84■□□□□ 0.45
HMGN4O00479 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGN4O00479 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGN4O00479 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
HMGN4O00479 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGN4O00479 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGN4O00479 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGN4O00479 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGN4O00479 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGN4O00479 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGN4O00479 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
HMGN4O00479 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.83■□□□□ 0.45
HMGN4O00479 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.83■□□□□ 0.45
HMGN4O00479 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.83■□□□□ 0.44
HMGN4O00479 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGN4O00479 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGN4O00479 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.83■□□□□ 0.44
HMGN4O00479 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGN4O00479 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGN4O00479 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGN4O00479 KRT18P6-201ENST00000555540 1265 ntBASIC17.83■□□□□ 0.44
HMGN4O00479 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.83■□□□□ 0.44
HMGN4O00479 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.83■□□□□ 0.44
HMGN4O00479 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGN4O00479 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.83■□□□□ 0.44
HMGN4O00479 AL031598.1-201ENST00000561511 1773 ntBASIC17.83■□□□□ 0.44
HMGN4O00479 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms