Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 FEM1AP3-201ENST00000403722 1741 ntBASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 AP001160.3-201ENST00000601484 763 ntBASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC15□□□□□ -0.01
TRAV1-1A0A0B4J248 HTR7P1-202ENST00000624664 4411 ntBASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 AC012317.2-201ENST00000623305 2251 ntBASIC14.99□□□□□ -0.01
TRAV1-1A0A0B4J248 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
TRAV1-1A0A0B4J248 AC138932.1-201ENST00000534164 6830 ntBASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
TRAV1-1A0A0B4J248 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms