Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
VPS28Q9UK41 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
VPS28Q9UK41 MESTP1-201ENST00000404287 994 ntBASIC19.77■□□□□ 0.76
VPS28Q9UK41 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.77■□□□□ 0.76
VPS28Q9UK41 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.77■□□□□ 0.76
VPS28Q9UK41 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS28Q9UK41 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS28Q9UK41 AC011298.2-201ENST00000617989 482 ntBASIC19.77■□□□□ 0.76
VPS28Q9UK41 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS28Q9UK41 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS28Q9UK41 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS28Q9UK41 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS28Q9UK41 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
VPS28Q9UK41 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
VPS28Q9UK41 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
VPS28Q9UK41 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS28Q9UK41 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 AC079598.2-202ENST00000546624 1451 ntBASIC19.76■□□□□ 0.75
VPS28Q9UK41 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS28Q9UK41 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS28Q9UK41 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS28Q9UK41 AC004951.3-201ENST00000418645 1148 ntBASIC19.76■□□□□ 0.75
VPS28Q9UK41 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 Z85996.1-201ENST00000494644 937 ntBASIC19.76■□□□□ 0.75
VPS28Q9UK41 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS28Q9UK41 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS28Q9UK41 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS28Q9UK41 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS28Q9UK41 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.76■□□□□ 0.75
VPS28Q9UK41 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS28Q9UK41 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
VPS28Q9UK41 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.75■□□□□ 0.75
VPS28Q9UK41 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
VPS28Q9UK41 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
VPS28Q9UK41 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS28Q9UK41 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS28Q9UK41 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS28Q9UK41 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS28Q9UK41 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS28Q9UK41 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS28Q9UK41 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS28Q9UK41 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS28Q9UK41 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS28Q9UK41 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS28Q9UK41 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS28Q9UK41 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS28Q9UK41 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS28Q9UK41 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS28Q9UK41 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS28Q9UK41 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS28Q9UK41 AC125437.2-201ENST00000625180 2167 ntBASIC19.74■□□□□ 0.75
VPS28Q9UK41 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS28Q9UK41 MMP23A-201ENST00000234610 1017 ntBASIC19.74■□□□□ 0.75
VPS28Q9UK41 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS28Q9UK41 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS28Q9UK41 MIR1238-201ENST00000408483 83 ntBASIC19.74■□□□□ 0.75
VPS28Q9UK41 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 AC130371.2-201ENST00000619443 611 ntBASIC19.74■□□□□ 0.75
VPS28Q9UK41 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS28Q9UK41 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS28Q9UK41 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
VPS28Q9UK41 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms