Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 SDHAP1-207ENST00000440850 2000 ntBASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 HTR7P1-201ENST00000538670 1336 ntBASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 KRT16P5-201ENST00000455284 522 ntBASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTCHD3Q3KNS1 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTCHD3Q3KNS1 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 C1QL1P1-201ENST00000568105 661 ntBASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
PTCHD3Q3KNS1 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.59
PTCHD3Q3KNS1 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.77■□□□□ 0.59
PTCHD3Q3KNS1 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PTCHD3Q3KNS1 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PTCHD3Q3KNS1 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.77■□□□□ 0.59
PTCHD3Q3KNS1 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.59
PTCHD3Q3KNS1 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 KRT17P2-201ENST00000300992 1314 ntBASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 TEX21P-204ENST00000641479 1693 ntBASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTCHD3Q3KNS1 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms