Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXF1Q12946 TEX21P-204ENST00000641479 1693 ntBASIC17.43■□□□□ 0.38
FOXF1Q12946 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
FOXF1Q12946 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXF1Q12946 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.43■□□□□ 0.38
FOXF1Q12946 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXF1Q12946 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
FOXF1Q12946 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.43■□□□□ 0.38
FOXF1Q12946 SNORA78-201ENST00000459373 127 ntBASIC17.43■□□□□ 0.38
FOXF1Q12946 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXF1Q12946 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXF1Q12946 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.43■□□□□ 0.38
FOXF1Q12946 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXF1Q12946 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXF1Q12946 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXF1Q12946 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.43■□□□□ 0.38
FOXF1Q12946 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXF1Q12946 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
FOXF1Q12946 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXF1Q12946 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
FOXF1Q12946 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXF1Q12946 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXF1Q12946 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXF1Q12946 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXF1Q12946 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXF1Q12946 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
FOXF1Q12946 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.42■□□□□ 0.38
FOXF1Q12946 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXF1Q12946 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXF1Q12946 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXF1Q12946 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXF1Q12946 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXF1Q12946 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.42■□□□□ 0.38
FOXF1Q12946 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
FOXF1Q12946 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXF1Q12946 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXF1Q12946 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
FOXF1Q12946 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXF1Q12946 TSPY7P-201ENST00000431358 1114 ntBASIC17.42■□□□□ 0.38
FOXF1Q12946 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXF1Q12946 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.42■□□□□ 0.38
FOXF1Q12946 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.42■□□□□ 0.38
FOXF1Q12946 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXF1Q12946 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXF1Q12946 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXF1Q12946 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXF1Q12946 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXF1Q12946 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
FOXF1Q12946 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXF1Q12946 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
FOXF1Q12946 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXF1Q12946 KRT8P41-201ENST00000533985 1514 ntBASIC17.42■□□□□ 0.38
FOXF1Q12946 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.41■□□□□ 0.38
FOXF1Q12946 RCC2P6-201ENST00000526625 1557 ntBASIC17.41■□□□□ 0.38
FOXF1Q12946 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
FOXF1Q12946 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.41■□□□□ 0.38
FOXF1Q12946 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
FOXF1Q12946 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.41■□□□□ 0.38
FOXF1Q12946 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
FOXF1Q12946 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.41■□□□□ 0.38
FOXF1Q12946 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.41■□□□□ 0.38
FOXF1Q12946 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
FOXF1Q12946 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.41■□□□□ 0.38
FOXF1Q12946 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
FOXF1Q12946 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.41■□□□□ 0.38
FOXF1Q12946 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
FOXF1Q12946 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXF1Q12946 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXF1Q12946 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXF1Q12946 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
FOXF1Q12946 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXF1Q12946 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXF1Q12946 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.4■□□□□ 0.38
FOXF1Q12946 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXF1Q12946 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXF1Q12946 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXF1Q12946 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXF1Q12946 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
FOXF1Q12946 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
FOXF1Q12946 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
FOXF1Q12946 NUDT16P1-203ENST00000513809 620 ntBASIC17.4■□□□□ 0.38
FOXF1Q12946 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.4■□□□□ 0.38
FOXF1Q12946 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
FOXF1Q12946 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.4■□□□□ 0.38
FOXF1Q12946 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXF1Q12946 AC026471.5-201ENST00000615068 467 ntBASIC17.4■□□□□ 0.38
FOXF1Q12946 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms