Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
RNF40O75150 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
RNF40O75150 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF40O75150 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF40O75150 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF40O75150 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF40O75150 LTB4R2-202ENST00000528054 3092 ntBASIC20.7■□□□□ 0.9
RNF40O75150 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF40O75150 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.7■□□□□ 0.9
RNF40O75150 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF40O75150 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF40O75150 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF40O75150 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF40O75150 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
RNF40O75150 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF40O75150 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
RNF40O75150 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.7■□□□□ 0.9
RNF40O75150 AL390719.1-204ENST00000412397 1219 ntBASIC20.7■□□□□ 0.9
RNF40O75150 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.7■□□□□ 0.9
RNF40O75150 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF40O75150 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
RNF40O75150 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.7■□□□□ 0.9
RNF40O75150 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF40O75150 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
RNF40O75150 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.7■□□□□ 0.9
RNF40O75150 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF40O75150 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
RNF40O75150 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF40O75150 AL691432.2-201ENST00000607222 2038 ntBASIC20.7■□□□□ 0.9
RNF40O75150 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF40O75150 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.69■□□□□ 0.9
RNF40O75150 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.69■□□□□ 0.9
RNF40O75150 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.69■□□□□ 0.9
RNF40O75150 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
RNF40O75150 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
RNF40O75150 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
RNF40O75150 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.69■□□□□ 0.9
RNF40O75150 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.69■□□□□ 0.9
RNF40O75150 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.69■□□□□ 0.9
RNF40O75150 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
RNF40O75150 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.69■□□□□ 0.9
RNF40O75150 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF40O75150 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.68■□□□□ 0.9
RNF40O75150 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.68■□□□□ 0.9
RNF40O75150 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 MIR1224-201ENST00000408193 85 ntBASIC20.68■□□□□ 0.9
RNF40O75150 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.68■□□□□ 0.9
RNF40O75150 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
RNF40O75150 AP001412.1-201ENST00000608405 714 ntBASIC20.68■□□□□ 0.9
RNF40O75150 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
RNF40O75150 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.68■□□□□ 0.9
RNF40O75150 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
RNF40O75150 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.68■□□□□ 0.9
RNF40O75150 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
RNF40O75150 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF40O75150 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
RNF40O75150 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF40O75150 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF40O75150 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF40O75150 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF40O75150 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF40O75150 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF40O75150 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF40O75150 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
RNF40O75150 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF40O75150 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.67■□□□□ 0.9
RNF40O75150 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF40O75150 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF40O75150 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF40O75150 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF40O75150 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF40O75150 AL135905.2-201ENST00000584934 1404 ntBASIC20.67■□□□□ 0.9
RNF40O75150 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF40O75150 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF40O75150 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms