Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
NPHP1O15259 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NPHP1O15259 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NPHP1O15259 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC24.21■■□□□ 1.47
NPHP1O15259 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC24.21■■□□□ 1.47
NPHP1O15259 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
NPHP1O15259 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC24.21■■□□□ 1.47
NPHP1O15259 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NPHP1O15259 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC24.21■■□□□ 1.47
NPHP1O15259 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
NPHP1O15259 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NPHP1O15259 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NPHP1O15259 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC24.21■■□□□ 1.47
NPHP1O15259 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
NPHP1O15259 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC24.2■■□□□ 1.46
NPHP1O15259 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC24.2■■□□□ 1.46
NPHP1O15259 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
NPHP1O15259 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC24.2■■□□□ 1.46
NPHP1O15259 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC24.2■■□□□ 1.46
NPHP1O15259 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
NPHP1O15259 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC24.2■■□□□ 1.46
NPHP1O15259 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC24.2■■□□□ 1.46
NPHP1O15259 PRSS44-201ENST00000515154 1146 ntBASIC24.2■■□□□ 1.46
NPHP1O15259 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC24.2■■□□□ 1.46
NPHP1O15259 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC24.2■■□□□ 1.46
NPHP1O15259 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC24.2■■□□□ 1.46
NPHP1O15259 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
NPHP1O15259 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
NPHP1O15259 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
NPHP1O15259 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
NPHP1O15259 GOLGA2P11-201ENST00000562660 1621 ntBASIC24.2■■□□□ 1.46
NPHP1O15259 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
NPHP1O15259 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC24.2■■□□□ 1.46
NPHP1O15259 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP1O15259 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP1O15259 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP1O15259 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP1O15259 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP1O15259 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC24.19■■□□□ 1.46
NPHP1O15259 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC24.19■■□□□ 1.46
NPHP1O15259 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
NPHP1O15259 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP1O15259 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
NPHP1O15259 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC24.19■■□□□ 1.46
NPHP1O15259 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC24.19■■□□□ 1.46
NPHP1O15259 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC24.19■■□□□ 1.46
NPHP1O15259 AC008622.2-201ENST00000617006 1229 ntBASIC24.19■■□□□ 1.46
NPHP1O15259 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC24.19■■□□□ 1.46
NPHP1O15259 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP1O15259 ME2-216ENST00000639850 2331 ntTSL 5 BASIC24.19■■□□□ 1.46
NPHP1O15259 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP1O15259 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NPHP1O15259 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC24.18■■□□□ 1.46
NPHP1O15259 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC24.18■■□□□ 1.46
NPHP1O15259 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
NPHP1O15259 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
NPHP1O15259 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP1O15259 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC24.18■■□□□ 1.46
NPHP1O15259 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP1O15259 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP1O15259 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP1O15259 AL450487.1-201ENST00000426799 995 ntBASIC24.18■■□□□ 1.46
NPHP1O15259 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC24.18■■□□□ 1.46
NPHP1O15259 KRT18P38-201ENST00000449496 1282 ntBASIC24.18■■□□□ 1.46
NPHP1O15259 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC24.18■■□□□ 1.46
NPHP1O15259 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC24.18■■□□□ 1.46
NPHP1O15259 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC24.18■■□□□ 1.46
NPHP1O15259 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC24.18■■□□□ 1.46
NPHP1O15259 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP1O15259 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC24.18■■□□□ 1.46
NPHP1O15259 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP1O15259 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
NPHP1O15259 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
NPHP1O15259 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
NPHP1O15259 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC24.18■■□□□ 1.46
NPHP1O15259 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP1O15259 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC24.17■■□□□ 1.46
NPHP1O15259 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP1O15259 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP1O15259 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
NPHP1O15259 DUSP5P1-201ENST00000441325 1139 ntBASIC24.17■■□□□ 1.46
NPHP1O15259 AC112907.2-201ENST00000448639 330 ntBASIC24.17■■□□□ 1.46
NPHP1O15259 SNX5-210ENST00000481323 562 ntTSL 3 BASIC24.17■■□□□ 1.46
NPHP1O15259 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP1O15259 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP1O15259 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC24.17■■□□□ 1.46
NPHP1O15259 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC24.17■■□□□ 1.46
NPHP1O15259 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
NPHP1O15259 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC24.17■■□□□ 1.46
NPHP1O15259 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP1O15259 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP1O15259 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP1O15259 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP1O15259 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
NPHP1O15259 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP1O15259 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC24.16■■□□□ 1.46
NPHP1O15259 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP1O15259 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
NPHP1O15259 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
NPHP1O15259 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC24.16■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms