Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM55Q9BYV6 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TRIM55Q9BYV6 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM55Q9BYV6 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM55Q9BYV6 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM55Q9BYV6 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 AL356652.1-201ENST00000615962 565 ntBASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM55Q9BYV6 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 KRT16P6-202ENST00000425692 1426 ntBASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM55Q9BYV6 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM55Q9BYV6 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
TRIM55Q9BYV6 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM55Q9BYV6 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM55Q9BYV6 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.39■□□□□ 0.7
TRIM55Q9BYV6 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM55Q9BYV6 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 LSM12P1-201ENST00000411836 588 ntBASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 AL355472.2-201ENST00000422958 438 ntBASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 AC142381.4-202ENST00000563973 229 ntBASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM55Q9BYV6 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM55Q9BYV6 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms