Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 STX6-204ENST00000542060 4809 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 AL353807.1-201ENST00000427475 662 ntBASIC14.91□□□□□ -0.02
CCDC140Q96MF4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC140Q96MF4 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 AF186192.3-201ENST00000583427 947 ntBASIC14.9□□□□□ -0.02
CCDC140Q96MF4 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 AC018445.3-201ENST00000624177 1945 ntBASIC14.9□□□□□ -0.02
CCDC140Q96MF4 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC140Q96MF4 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 KSR1P1-201ENST00000446298 240 ntBASIC14.89□□□□□ -0.03
CCDC140Q96MF4 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 RPS2P4-201ENST00000476944 856 ntBASIC14.89□□□□□ -0.03
CCDC140Q96MF4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 Z85996.1-201ENST00000494644 937 ntBASIC14.89□□□□□ -0.03
CCDC140Q96MF4 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 AL161938.1-201ENST00000569833 2180 ntBASIC14.89□□□□□ -0.03
CCDC140Q96MF4 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC140Q96MF4 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms