Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHFRQ96EP1 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHFRQ96EP1 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CHFRQ96EP1 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHFRQ96EP1 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHFRQ96EP1 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHFRQ96EP1 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHFRQ96EP1 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHFRQ96EP1 AC092667.1-201ENST00000434301 2586 ntBASIC19.61■□□□□ 0.73
CHFRQ96EP1 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHFRQ96EP1 IER3-202ENST00000376377 1350 ntBASIC19.61■□□□□ 0.73
CHFRQ96EP1 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHFRQ96EP1 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHFRQ96EP1 KRT18P56-201ENST00000507275 550 ntBASIC19.61■□□□□ 0.73
CHFRQ96EP1 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 HYMAI.1-201ENST00000620949 238 ntBASIC19.61■□□□□ 0.73
CHFRQ96EP1 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHFRQ96EP1 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHFRQ96EP1 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHFRQ96EP1 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
CHFRQ96EP1 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.61■□□□□ 0.73
CHFRQ96EP1 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHFRQ96EP1 SLC25A24-204ENST00000569674 2357 ntBASIC19.61■□□□□ 0.73
CHFRQ96EP1 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHFRQ96EP1 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHFRQ96EP1 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHFRQ96EP1 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHFRQ96EP1 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHFRQ96EP1 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHFRQ96EP1 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHFRQ96EP1 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHFRQ96EP1 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHFRQ96EP1 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHFRQ96EP1 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 AC083849.1-201ENST00000615227 514 ntBASIC19.6■□□□□ 0.73
CHFRQ96EP1 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHFRQ96EP1 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHFRQ96EP1 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.6■□□□□ 0.73
CHFRQ96EP1 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHFRQ96EP1 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.59■□□□□ 0.73
CHFRQ96EP1 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CHFRQ96EP1 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CHFRQ96EP1 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.59■□□□□ 0.73
CHFRQ96EP1 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.59■□□□□ 0.73
CHFRQ96EP1 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CHFRQ96EP1 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.59■□□□□ 0.73
CHFRQ96EP1 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.59■□□□□ 0.73
CHFRQ96EP1 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.59■□□□□ 0.73
CHFRQ96EP1 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHFRQ96EP1 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
CHFRQ96EP1 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.58■□□□□ 0.73
CHFRQ96EP1 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHFRQ96EP1 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHFRQ96EP1 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHFRQ96EP1 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.58■□□□□ 0.72
CHFRQ96EP1 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.58■□□□□ 0.72
CHFRQ96EP1 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.58■□□□□ 0.72
CHFRQ96EP1 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.58■□□□□ 0.72
CHFRQ96EP1 AL121894.2-201ENST00000602977 491 ntBASIC19.58■□□□□ 0.72
CHFRQ96EP1 AC099778.1-201ENST00000568593 1911 ntBASIC19.58■□□□□ 0.72
CHFRQ96EP1 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHFRQ96EP1 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.58■□□□□ 0.72
CHFRQ96EP1 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms