Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
YBX1P67809 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
YBX1P67809 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.8■□□□□ 0.6
YBX1P67809 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
YBX1P67809 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
YBX1P67809 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
YBX1P67809 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
YBX1P67809 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
YBX1P67809 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
YBX1P67809 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.79■□□□□ 0.6
YBX1P67809 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.79■□□□□ 0.6
YBX1P67809 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.79■□□□□ 0.6
YBX1P67809 AC066615.1-201ENST00000640911 628 ntBASIC18.79■□□□□ 0.6
YBX1P67809 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
YBX1P67809 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.79■□□□□ 0.6
YBX1P67809 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
YBX1P67809 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.79■□□□□ 0.6
YBX1P67809 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.78■□□□□ 0.6
YBX1P67809 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.78■□□□□ 0.6
YBX1P67809 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 HTR7P1-201ENST00000538670 1336 ntBASIC18.78■□□□□ 0.6
YBX1P67809 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.78■□□□□ 0.6
YBX1P67809 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.78■□□□□ 0.6
YBX1P67809 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
YBX1P67809 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.78■□□□□ 0.6
YBX1P67809 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.78■□□□□ 0.6
YBX1P67809 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.78■□□□□ 0.6
YBX1P67809 AC004264.1-201ENST00000608354 794 ntBASIC18.78■□□□□ 0.6
YBX1P67809 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
YBX1P67809 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
YBX1P67809 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.78■□□□□ 0.6
YBX1P67809 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
YBX1P67809 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.78■□□□□ 0.6
YBX1P67809 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.77■□□□□ 0.6
YBX1P67809 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.77■□□□□ 0.6
YBX1P67809 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
YBX1P67809 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
YBX1P67809 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.77■□□□□ 0.6
YBX1P67809 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.77■□□□□ 0.6
YBX1P67809 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
YBX1P67809 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
YBX1P67809 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
YBX1P67809 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.77■□□□□ 0.6
YBX1P67809 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.77■□□□□ 0.6
YBX1P67809 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
YBX1P67809 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.77■□□□□ 0.6
YBX1P67809 C1QL1P1-201ENST00000568105 661 ntBASIC18.77■□□□□ 0.6
YBX1P67809 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.77■□□□□ 0.6
YBX1P67809 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.77■□□□□ 0.6
YBX1P67809 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.77■□□□□ 0.6
YBX1P67809 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
YBX1P67809 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
YBX1P67809 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
YBX1P67809 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
YBX1P67809 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.59
YBX1P67809 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
YBX1P67809 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
YBX1P67809 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
YBX1P67809 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
YBX1P67809 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
YBX1P67809 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
YBX1P67809 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
YBX1P67809 KRT8P8-201ENST00000434750 1448 ntBASIC18.76■□□□□ 0.59
YBX1P67809 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.76■□□□□ 0.59
YBX1P67809 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
YBX1P67809 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
YBX1P67809 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
YBX1P67809 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms