Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
VCPP55072 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.61■□□□□ 0.89
VCPP55072 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.61■□□□□ 0.89
VCPP55072 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.61■□□□□ 0.89
VCPP55072 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VCPP55072 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VCPP55072 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VCPP55072 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VCPP55072 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
VCPP55072 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VCPP55072 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
VCPP55072 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VCPP55072 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.6■□□□□ 0.89
VCPP55072 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.6■□□□□ 0.89
VCPP55072 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.6■□□□□ 0.89
VCPP55072 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.6■□□□□ 0.89
VCPP55072 TREX1-205ENST00000625293 1783 ntBASIC20.6■□□□□ 0.89
VCPP55072 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.6■□□□□ 0.89
VCPP55072 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
VCPP55072 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VCPP55072 LIN28AP1-201ENST00000429574 405 ntBASIC20.6■□□□□ 0.89
VCPP55072 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
VCPP55072 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.6■□□□□ 0.89
VCPP55072 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VCPP55072 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
VCPP55072 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VCPP55072 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VCPP55072 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VCPP55072 KRT8P17-201ENST00000453110 1448 ntBASIC20.6■□□□□ 0.89
VCPP55072 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.6■□□□□ 0.89
VCPP55072 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VCPP55072 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.6■□□□□ 0.89
VCPP55072 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.6■□□□□ 0.89
VCPP55072 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.59■□□□□ 0.89
VCPP55072 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.59■□□□□ 0.89
VCPP55072 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
VCPP55072 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 ATP5G1P1-201ENST00000448724 379 ntBASIC20.59■□□□□ 0.89
VCPP55072 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
VCPP55072 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.59■□□□□ 0.89
VCPP55072 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.59■□□□□ 0.89
VCPP55072 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.59■□□□□ 0.89
VCPP55072 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
VCPP55072 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.59■□□□□ 0.89
VCPP55072 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
VCPP55072 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
VCPP55072 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCPP55072 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VCPP55072 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VCPP55072 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.58■□□□□ 0.89
VCPP55072 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VCPP55072 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VCPP55072 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.58■□□□□ 0.89
VCPP55072 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.58■□□□□ 0.89
VCPP55072 AP002982.1-201ENST00000492365 877 ntBASIC20.58■□□□□ 0.89
VCPP55072 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.58■□□□□ 0.89
VCPP55072 AC022616.7-201ENST00000525383 220 ntBASIC20.58■□□□□ 0.89
VCPP55072 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.58■□□□□ 0.89
VCPP55072 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.58■□□□□ 0.89
VCPP55072 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VCPP55072 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.58■□□□□ 0.89
VCPP55072 AL121829.2-201ENST00000620908 328 ntBASIC20.58■□□□□ 0.89
VCPP55072 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.58■□□□□ 0.89
VCPP55072 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
VCPP55072 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VCPP55072 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
VCPP55072 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
VCPP55072 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
VCPP55072 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.57■□□□□ 0.88
VCPP55072 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
VCPP55072 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCPP55072 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.57■□□□□ 0.88
VCPP55072 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCPP55072 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.57■□□□□ 0.88
VCPP55072 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCPP55072 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
VCPP55072 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
VCPP55072 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VCPP55072 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCPP55072 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCPP55072 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VCPP55072 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.57■□□□□ 0.88
VCPP55072 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VCPP55072 DUSP5P1-201ENST00000441325 1139 ntBASIC20.57■□□□□ 0.88
VCPP55072 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms