Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
MSX2P35548 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.39■□□□□ 0.54
MSX2P35548 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
MSX2P35548 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
MSX2P35548 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
MSX2P35548 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
MSX2P35548 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.39■□□□□ 0.53
MSX2P35548 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.39■□□□□ 0.53
MSX2P35548 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.39■□□□□ 0.53
MSX2P35548 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.39■□□□□ 0.53
MSX2P35548 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.39■□□□□ 0.53
MSX2P35548 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.39■□□□□ 0.53
MSX2P35548 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.39■□□□□ 0.53
MSX2P35548 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MSX2P35548 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
MSX2P35548 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.38■□□□□ 0.53
MSX2P35548 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX2P35548 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MSX2P35548 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MSX2P35548 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.38■□□□□ 0.53
MSX2P35548 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
MSX2P35548 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX2P35548 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.38■□□□□ 0.53
MSX2P35548 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX2P35548 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
MSX2P35548 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX2P35548 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.38■□□□□ 0.53
MSX2P35548 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.38■□□□□ 0.53
MSX2P35548 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX2P35548 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX2P35548 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.38■□□□□ 0.53
MSX2P35548 AC010536.3-201ENST00000620306 533 ntBASIC18.38■□□□□ 0.53
MSX2P35548 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MSX2P35548 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.38■□□□□ 0.53
MSX2P35548 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
MSX2P35548 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
MSX2P35548 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX2P35548 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX2P35548 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
MSX2P35548 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.38■□□□□ 0.53
MSX2P35548 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
MSX2P35548 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
MSX2P35548 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSX2P35548 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSX2P35548 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSX2P35548 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSX2P35548 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
MSX2P35548 MCRIP2P1-201ENST00000394346 511 ntBASIC18.37■□□□□ 0.53
MSX2P35548 KRT19P1-201ENST00000405746 1186 ntBASIC18.37■□□□□ 0.53
MSX2P35548 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
MSX2P35548 AC018553.1-201ENST00000616682 1458 ntBASIC18.37■□□□□ 0.53
MSX2P35548 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
MSX2P35548 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSX2P35548 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSX2P35548 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.37■□□□□ 0.53
MSX2P35548 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSX2P35548 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.37■□□□□ 0.53
MSX2P35548 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.37■□□□□ 0.53
MSX2P35548 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSX2P35548 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSX2P35548 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
MSX2P35548 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX2P35548 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSX2P35548 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.36■□□□□ 0.53
MSX2P35548 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
MSX2P35548 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSX2P35548 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.36■□□□□ 0.53
MSX2P35548 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.36■□□□□ 0.53
MSX2P35548 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.36■□□□□ 0.53
MSX2P35548 AC105020.6-201ENST00000621523 1217 ntBASIC18.36■□□□□ 0.53
MSX2P35548 AC093525.10-201ENST00000625130 1569 ntBASIC18.36■□□□□ 0.53
MSX2P35548 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX2P35548 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSX2P35548 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.36■□□□□ 0.53
MSX2P35548 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.36■□□□□ 0.53
MSX2P35548 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.36■□□□□ 0.53
MSX2P35548 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
MSX2P35548 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.36■□□□□ 0.53
MSX2P35548 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.35■□□□□ 0.53
MSX2P35548 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.35■□□□□ 0.53
MSX2P35548 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSX2P35548 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms