Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RORAP35398 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
RORAP35398 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.31■□□□□ 0.52
RORAP35398 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RORAP35398 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
RORAP35398 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RORAP35398 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RORAP35398 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.31■□□□□ 0.52
RORAP35398 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.31■□□□□ 0.52
RORAP35398 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.31■□□□□ 0.52
RORAP35398 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
RORAP35398 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RORAP35398 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RORAP35398 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.31■□□□□ 0.52
RORAP35398 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RORAP35398 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RORAP35398 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
RORAP35398 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RORAP35398 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.31■□□□□ 0.52
RORAP35398 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.31■□□□□ 0.52
RORAP35398 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RORAP35398 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
RORAP35398 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.3■□□□□ 0.52
RORAP35398 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
RORAP35398 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.3■□□□□ 0.52
RORAP35398 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.3■□□□□ 0.52
RORAP35398 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 AL137013.1-201ENST00000432946 1228 ntBASIC18.3■□□□□ 0.52
RORAP35398 MFAP1P1-201ENST00000442257 1255 ntBASIC18.3■□□□□ 0.52
RORAP35398 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.3■□□□□ 0.52
RORAP35398 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.3■□□□□ 0.52
RORAP35398 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
RORAP35398 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
RORAP35398 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.3■□□□□ 0.52
RORAP35398 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.3■□□□□ 0.52
RORAP35398 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.3■□□□□ 0.52
RORAP35398 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
RORAP35398 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RORAP35398 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RORAP35398 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.29■□□□□ 0.52
RORAP35398 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
RORAP35398 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.29■□□□□ 0.52
RORAP35398 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RORAP35398 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.29■□□□□ 0.52
RORAP35398 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.29■□□□□ 0.52
RORAP35398 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RORAP35398 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
RORAP35398 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RORAP35398 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.29■□□□□ 0.52
RORAP35398 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RORAP35398 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RORAP35398 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.29■□□□□ 0.52
RORAP35398 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.29■□□□□ 0.52
RORAP35398 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.29■□□□□ 0.52
RORAP35398 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.29■□□□□ 0.52
RORAP35398 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.29■□□□□ 0.52
RORAP35398 KRT18P57-201ENST00000443599 1254 ntBASIC18.29■□□□□ 0.52
RORAP35398 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RORAP35398 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.29■□□□□ 0.52
RORAP35398 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.29■□□□□ 0.52
RORAP35398 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.29■□□□□ 0.52
RORAP35398 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.29■□□□□ 0.52
RORAP35398 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.29■□□□□ 0.52
RORAP35398 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.29■□□□□ 0.52
RORAP35398 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RORAP35398 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
RORAP35398 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
RORAP35398 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.28■□□□□ 0.52
RORAP35398 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RORAP35398 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.28■□□□□ 0.52
RORAP35398 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RORAP35398 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RORAP35398 LINC01465-201ENST00000408887 1940 ntBASIC18.28■□□□□ 0.52
RORAP35398 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RORAP35398 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
RORAP35398 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.28■□□□□ 0.52
RORAP35398 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RORAP35398 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.28■□□□□ 0.52
RORAP35398 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.28■□□□□ 0.52
RORAP35398 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
RORAP35398 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RORAP35398 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RORAP35398 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
RORAP35398 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RORAP35398 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RORAP35398 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RORAP35398 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.27■□□□□ 0.52
RORAP35398 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RORAP35398 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms