Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
TPM1P09493 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TPM1P09493 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
TPM1P09493 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TPM1P09493 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TPM1P09493 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TPM1P09493 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TPM1P09493 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.21■□□□□ 0.99
TPM1P09493 DUX4L16-201ENST00000555130 1264 ntBASIC21.21■□□□□ 0.99
TPM1P09493 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.21■□□□□ 0.99
TPM1P09493 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.21■□□□□ 0.99
TPM1P09493 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.21■□□□□ 0.99
TPM1P09493 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TPM1P09493 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TPM1P09493 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.21■□□□□ 0.99
TPM1P09493 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
TPM1P09493 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
TPM1P09493 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
TPM1P09493 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TPM1P09493 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TPM1P09493 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TPM1P09493 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.21■□□□□ 0.99
TPM1P09493 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TPM1P09493 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.21■□□□□ 0.99
TPM1P09493 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
TPM1P09493 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.2■□□□□ 0.99
TPM1P09493 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
TPM1P09493 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
TPM1P09493 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.2■□□□□ 0.98
TPM1P09493 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.2■□□□□ 0.98
TPM1P09493 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.2■□□□□ 0.98
TPM1P09493 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.2■□□□□ 0.98
TPM1P09493 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.2■□□□□ 0.98
TPM1P09493 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.2■□□□□ 0.98
TPM1P09493 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
TPM1P09493 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
TPM1P09493 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.2■□□□□ 0.98
TPM1P09493 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
TPM1P09493 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM1P09493 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TPM1P09493 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM1P09493 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.19■□□□□ 0.98
TPM1P09493 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.19■□□□□ 0.98
TPM1P09493 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.19■□□□□ 0.98
TPM1P09493 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM1P09493 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM1P09493 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM1P09493 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM1P09493 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.19■□□□□ 0.98
TPM1P09493 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.19■□□□□ 0.98
TPM1P09493 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
TPM1P09493 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.19■□□□□ 0.98
TPM1P09493 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TPM1P09493 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.19■□□□□ 0.98
TPM1P09493 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.19■□□□□ 0.98
TPM1P09493 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.19■□□□□ 0.98
TPM1P09493 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM1P09493 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
TPM1P09493 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
TPM1P09493 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
TPM1P09493 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
TPM1P09493 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
TPM1P09493 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM1P09493 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.19■□□□□ 0.98
TPM1P09493 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM1P09493 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 TEX21P-204ENST00000641479 1693 ntBASIC21.18■□□□□ 0.98
TPM1P09493 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
TPM1P09493 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TPM1P09493 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.18■□□□□ 0.98
TPM1P09493 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
TPM1P09493 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.18■□□□□ 0.98
TPM1P09493 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.18■□□□□ 0.98
TPM1P09493 OR10C1-204ENST00000622521 1039 ntBASIC21.18■□□□□ 0.98
TPM1P09493 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.18■□□□□ 0.98
TPM1P09493 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
TPM1P09493 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
TPM1P09493 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
TPM1P09493 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM1P09493 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms