Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 UBE2DNL-204ENST00000602536 740 ntBASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 AL591742.1-201ENST00000604433 565 ntBASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USH1CQ9Y6N9 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USH1CQ9Y6N9 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 PHGDH-210ENST00000641115 1638 ntBASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.19■□□□□ 0.66
USH1CQ9Y6N9 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 KRT18P14-201ENST00000534205 1250 ntBASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 MYCNOS-205ENST00000641950 531 ntBASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.18■□□□□ 0.66
USH1CQ9Y6N9 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms