Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL4A3BPQ9Y5P4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 AC093484.2-201ENST00000580996 2166 ntBASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.6■■□□□ 1.05
COL4A3BPQ9Y5P4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL4A3BPQ9Y5P4 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 AL445675.2-201ENST00000620291 557 ntBASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 REXO1L12P-201ENST00000622156 912 ntBASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
COL4A3BPQ9Y5P4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL4A3BPQ9Y5P4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL4A3BPQ9Y5P4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.58■■□□□ 1.04
COL4A3BPQ9Y5P4 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
COL4A3BPQ9Y5P4 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.04
COL4A3BPQ9Y5P4 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 AC005332.7-201ENST00000614046 2005 ntBASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 REXO1L10P-201ENST00000615707 1290 ntBASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A3BPQ9Y5P4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.56■■□□□ 1.04
COL4A3BPQ9Y5P4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms