Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.65■□□□□ 0.42
DDX28Q9NUL7 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 AC005332.7-201ENST00000614046 2005 ntBASIC17.64■□□□□ 0.41
DDX28Q9NUL7 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 PCDHB18P-201ENST00000524813 2368 ntBASIC17.64■□□□□ 0.41
DDX28Q9NUL7 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 CYP2T1P-201ENST00000432607 1285 ntBASIC17.64■□□□□ 0.41
DDX28Q9NUL7 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 NOC2LP1-202ENST00000452600 2235 ntBASIC17.64■□□□□ 0.41
DDX28Q9NUL7 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DDX28Q9NUL7 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 METTL26-203ENST00000397664 604 ntTSL 2 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 AC069236.1-201ENST00000604339 616 ntBASIC17.63■□□□□ 0.41
DDX28Q9NUL7 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
DDX28Q9NUL7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.62■□□□□ 0.41
DDX28Q9NUL7 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 AC007322.1-201ENST00000426983 750 ntBASIC17.61■□□□□ 0.41
DDX28Q9NUL7 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 AC105020.6-201ENST00000621523 1217 ntBASIC17.61■□□□□ 0.41
DDX28Q9NUL7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms