Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 AC091874.3-201ENST00000512672 1195 ntBASIC17.43■□□□□ 0.38
HINT3Q9NQE9 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.43■□□□□ 0.38
HINT3Q9NQE9 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HINT3Q9NQE9 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
HINT3Q9NQE9 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
HINT3Q9NQE9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.43■□□□□ 0.38
HINT3Q9NQE9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.43■□□□□ 0.38
HINT3Q9NQE9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HINT3Q9NQE9 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HINT3Q9NQE9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HINT3Q9NQE9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HINT3Q9NQE9 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 AC104581.1-202ENST00000635932 2618 ntBASIC17.41■□□□□ 0.38
HINT3Q9NQE9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 KRT18P6-201ENST00000555540 1265 ntBASIC17.41■□□□□ 0.38
HINT3Q9NQE9 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
HINT3Q9NQE9 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 CD99P1-205ENST00000527459 561 ntBASIC17.4■□□□□ 0.38
HINT3Q9NQE9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HINT3Q9NQE9 AC007613.1-201ENST00000572811 2597 ntBASIC17.39■□□□□ 0.38
HINT3Q9NQE9 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.39■□□□□ 0.38
HINT3Q9NQE9 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
HINT3Q9NQE9 AC009113.1-201ENST00000570267 2443 ntBASIC17.39■□□□□ 0.37
HINT3Q9NQE9 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HINT3Q9NQE9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.39■□□□□ 0.37
HINT3Q9NQE9 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
HINT3Q9NQE9 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms