Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 CYP2T3P-201ENST00000601990 817 ntBASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 BRWD1-AS2-201ENST00000603064 1028 ntBASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 MIR6821-201ENST00000617625 74 ntBASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 AL355472.2-201ENST00000422958 438 ntBASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 KRT18P5-201ENST00000436075 1291 ntBASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 AL589743.5-201ENST00000616611 1050 ntBASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 AC011767.1-201ENST00000617410 1153 ntBASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 PHGDH-210ENST00000641115 1638 ntBASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CHMP1AQ9HD42 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CHMP1AQ9HD42 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CHMP1AQ9HD42 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
CHMP1AQ9HD42 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC16.58■□□□□ 0.25
CHMP1AQ9HD42 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.25
CHMP1AQ9HD42 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 CNN2P6-201ENST00000439038 900 ntBASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 HES2-205ENST00000487437 968 ntTSL 3 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 DUX4L16-201ENST00000555130 1264 ntBASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 AL138781.2-201ENST00000617896 1843 ntBASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CHMP1AQ9HD42 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 AC007322.1-201ENST00000426983 750 ntBASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CHMP1AQ9HD42 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CHMP1AQ9HD42 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms