Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LINC00643Q86TS7 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 AL161938.1-201ENST00000569833 2180 ntBASIC12.09□□□□□ -0.47
LINC00643Q86TS7 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 AC134043.2-201ENST00000624206 2238 ntBASIC12.09□□□□□ -0.47
LINC00643Q86TS7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 AC011551.1-201ENST00000614101 683 ntBASIC12.09□□□□□ -0.47
LINC00643Q86TS7 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 NF2-208ENST00000403435 2568 ntTSL 5 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
LINC00643Q86TS7 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.47
LINC00643Q86TS7 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 AC011676.5-201ENST00000624864 2660 ntBASIC12.08□□□□□ -0.48
LINC00643Q86TS7 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 AC068587.6-202ENST00000641839 5619 ntBASIC12.08□□□□□ -0.48
LINC00643Q86TS7 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 AL645608.8-201ENST00000606034 2086 ntBASIC12.08□□□□□ -0.48
LINC00643Q86TS7 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 AL034346.1-201ENST00000568244 1277 ntBASIC12.08□□□□□ -0.48
LINC00643Q86TS7 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00643Q86TS7 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms