Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC12.87□□□□□ -0.359e-7■□□□□ 11.1
LSM11P83369 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.434e-10■□□□□ 11.1
LSM11P83369 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.49□□□□□ -0.254e-10■□□□□ 11.1
LSM11P83369 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.274e-10■□□□□ 11.1
LSM11P83369 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.131e-8■□□□□ 11.1
LSM11P83369 U2SURP-205ENST00000467348 1267 ntTSL 512.06□□□□□ -0.481e-8■□□□□ 11.1
LSM11P83369 AFMID-202ENST00000409257 1730 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.541e-8■□□□□ 11.1
LSM11P83369 PRKAB2-201ENST00000254101 5417 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.671e-8■□□□□ 11.1
LSM11P83369 C16orf58-208ENST00000567673 766 ntTSL 210.21□□□□□ -0.771e-8■□□□□ 11.1
LSM11P83369 TRIM66-201ENST00000299550 9753 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.141e-8■□□□□ 11.1
LSM11P83369 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC7.21□□□□□ -1.261e-8■□□□□ 11.1
LSM11P83369 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.88□□□□□ -1.631e-8■□□□□ 11.1
LSM11P83369 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.691e-8■□□□□ 11.1
LSM11P83369 U2SURP-203ENST00000463563 4364 ntTSL 23.07□□□□□ -1.921e-8■□□□□ 11.1
LSM11P83369 RBM39-243ENST00000528062 2421 ntTSL 1 (best) BASIC12.25□□□□□ -0.451e-8■□□□□ 11.1
LSM11P83369 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.19e-15■□□□□ 11.1
LSM11P83369 TUBG2-202ENST00000588870 1776 ntTSL 1 (best)13.32□□□□□ -0.289e-15■□□□□ 11.1
LSM11P83369 RBM5-201ENST00000347869 3188 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.12e-7■□□□□ 11.1
LSM11P83369 RBM5-212ENST00000464087 5616 ntTSL 27.35□□□□□ -1.232e-7■□□□□ 11.1
LSM11P83369 RNF103-CHMP3-201ENST00000440757 805 ntTSL 316.27■□□□□ 0.27e-8■□□□□ 11.1
LSM11P83369 CHMP3-207ENST00000485465 920 ntTSL 315.82■□□□□ 0.127e-8■□□□□ 11.1
LSM11P83369 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.78□□□□□ -0.047e-8■□□□□ 11.1
LSM11P83369 CHMP3-202ENST00000393773 727 ntTSL 313.48□□□□□ -0.257e-8■□□□□ 11.1
LSM11P83369 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.487e-8■□□□□ 11.1
LSM11P83369 CHMP3-201ENST00000263856 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.527e-8■□□□□ 11.1
LSM11P83369 CHMP3-204ENST00000409727 1851 ntTSL 2 BASIC11.46□□□□□ -0.587e-8■□□□□ 11.1
LSM11P83369 CHMP3-208ENST00000486404 650 ntTSL 311.14□□□□□ -0.637e-8■□□□□ 11.1
LSM11P83369 IL17RB-203ENST00000494338 1048 ntTSL 511.76□□□□□ -0.532e-7■□□□□ 11.1
LSM11P83369 RBM39-237ENST00000492779 2316 ntTSL 26.31□□□□□ -1.41e-13■□□□□ 11.1
LSM11P83369 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.152e-9■□□□□ 11.1
LSM11P83369 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.44■□□□□ 0.862e-9■□□□□ 11.1
LSM11P83369 CCNF-201ENST00000293968 4173 ntTSL 1 (best)13.98□□□□□ -0.172e-9■□□□□ 11.1
LSM11P83369 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.182e-9■□□□□ 11.1
LSM11P83369 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC11.05□□□□□ -0.642e-9■□□□□ 11.1
LSM11P83369 AC005307.1-201ENST00000567877 1570 ntTSL 3 BASIC9.16□□□□□ -0.943e-9■□□□□ 11.1
LSM11P83369 DDX39B-219ENST00000481456 5158 ntTSL 210.52□□□□□ -0.734e-13■□□□□ 11.1
LSM11P83369 DDX39B-207ENST00000427214 1005 ntTSL 59.21□□□□□ -0.944e-13■□□□□ 11.1
LSM11P83369 COL27A1-204ENST00000477421 3991 ntTSL 210.29□□□□□ -0.763e-11■□□□□ 11.1
LSM11P83369 FAM53C-201ENST00000239906 4377 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.825e-11■□□□□ 11.1
LSM11P83369 APOL2-209ENST00000529194 611 ntTSL 38.62□□□□□ -1.032e-16■□□□□ 11.1
LSM11P83369 NPIPB3-210ENST00000542817 1342 ntTSL 5 BASIC9.64□□□□□ -0.875e-8■□□□□ 11.1
LSM11P83369 NPIPB3-203ENST00000504841 1254 ntAPPRIS P1 TSL 1 (best)7.03□□□□□ -1.285e-8■□□□□ 11.1
LSM11P83369 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.38e-8■□□□□ 11.1
LSM11P83369 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.118e-8■□□□□ 11.1
LSM11P83369 KMT5A-204ENST00000437519 1774 ntTSL 211.77□□□□□ -0.538e-8■□□□□ 11.1
LSM11P83369 FAM219B-206ENST00000563671 865 ntTSL 219.68■□□□□ 0.741e-6■□□□□ 11.1
LSM11P83369 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.371e-6■□□□□ 11.1
LSM11P83369 FAM219B-217ENST00000569524 3219 ntTSL 214.24□□□□□ -0.131e-6■□□□□ 11.1
LSM11P83369 FAM219B-215ENST00000566894 4706 ntTSL 214.07□□□□□ -0.161e-6■□□□□ 11.1
LSM11P83369 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.191e-6■□□□□ 11.1
LSM11P83369 FAM219B-213ENST00000566132 624 ntTSL 38.93□□□□□ -0.981e-6■□□□□ 11.1
LSM11P83369 FAM219B-210ENST00000564723 208 ntTSL 27.22□□□□□ -1.251e-6■□□□□ 11.1
LSM11P83369 PGGHG-207ENST00000482937 734 ntTSL 514.88□□□□□ -0.034e-7■□□□□ 11
LSM11P83369 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.228e-8■□□□□ 11
LSM11P83369 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.348e-8■□□□□ 11
LSM11P83369 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.26■■□□□ 1.311e-12■□□□□ 11
LSM11P83369 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.79■□□□□ 0.921e-12■□□□□ 11
LSM11P83369 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.761e-12■□□□□ 11
LSM11P83369 ACAA1-203ENST00000411549 1944 ntTSL 1 (best)18.78■□□□□ 0.61e-12■□□□□ 11
LSM11P83369 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.34■□□□□ 0.371e-12■□□□□ 11
LSM11P83369 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.09■□□□□ 0.331e-12■□□□□ 11
LSM11P83369 ACAA1-216ENST00000480865 1540 ntTSL 513.6□□□□□ -0.231e-12■□□□□ 11
LSM11P83369 ACAA1-215ENST00000469600 876 ntTSL 212.86□□□□□ -0.351e-12■□□□□ 11
LSM11P83369 LAMB2-212ENST00000484713 412 ntTSL 211.49□□□□□ -0.571e-12■□□□□ 11
LSM11P83369 ACAA1-211ENST00000452171 927 ntTSL 311.04□□□□□ -0.641e-12■□□□□ 11
LSM11P83369 ACAA1-210ENST00000451419 964 ntTSL 310.93□□□□□ -0.661e-12■□□□□ 11
LSM11P83369 ACAA1-214ENST00000469559 4720 ntTSL 210.9□□□□□ -0.671e-12■□□□□ 11
LSM11P83369 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.32e-9■□□□□ 11
LSM11P83369 PRPSAP1-201ENST00000324684 1678 ntTSL 2 BASIC9.58□□□□□ -0.882e-9■□□□□ 11
LSM11P83369 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.12■□□□□ 0.015e-13■□□□□ 11
LSM11P83369 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.225e-13■□□□□ 11
LSM11P83369 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.295e-13■□□□□ 11
LSM11P83369 LSS-210ENST00000491729 2143 ntTSL 212.17□□□□□ -0.465e-13■□□□□ 11
LSM11P83369 LSS-208ENST00000474319 3601 ntTSL 210.31□□□□□ -0.765e-13■□□□□ 11
LSM11P83369 LSS-203ENST00000419093 517 ntTSL 38.85□□□□□ -0.995e-13■□□□□ 11
LSM11P83369 AC124798.1-201ENST00000568280 2883 ntBASIC9.18□□□□□ -0.947e-7■□□□□ 11
LSM11P83369 DHX38-202ENST00000562774 500 ntTSL 417.58■□□□□ 0.41e-7■□□□□ 11
LSM11P83369 DHX38-214ENST00000579387 2258 ntTSL 516.43■□□□□ 0.221e-7■□□□□ 11
LSM11P83369 DHX38-211ENST00000567552 1028 ntTSL 215.74■□□□□ 0.111e-7■□□□□ 11
LSM11P83369 DHX38-210ENST00000567142 892 ntTSL 215.74■□□□□ 0.111e-7■□□□□ 11
LSM11P83369 TBCD-221ENST00000576603 765 ntTSL 313.96□□□□□ -0.171e-7■□□□□ 11
LSM11P83369 TBCD-218ENST00000575132 707 ntTSL 512.8□□□□□ -0.361e-7■□□□□ 11
LSM11P83369 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.571e-7■□□□□ 11
LSM11P83369 DHX38-204ENST00000563819 706 ntTSL 310.4□□□□□ -0.741e-7■□□□□ 11
LSM11P83369 PLCG1-204ENST00000461641 936 ntTSL 511.05□□□□□ -0.641e-8■□□□□ 11
LSM11P83369 AGXT-202ENST00000470255 2638 ntTSL 216.24■□□□□ 0.199e-10■□□□□ 11
LSM11P83369 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.139e-10■□□□□ 11
LSM11P83369 IST1-203ENST00000378799 4843 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.542e-9■□□□□ 11
LSM11P83369 IST1-201ENST00000329908 2356 ntTSL 1 (best) BASIC10.57□□□□□ -0.722e-9■□□□□ 11
LSM11P83369 IST1-205ENST00000439924 1841 ntTSL 510.5□□□□□ -0.732e-9■□□□□ 11
LSM11P83369 IST1-206ENST00000456820 2031 ntTSL 59.85□□□□□ -0.832e-9■□□□□ 11
LSM11P83369 IST1-202ENST00000378798 2255 ntTSL 1 (best) BASIC9.63□□□□□ -0.872e-9■□□□□ 11
LSM11P83369 IST1-226ENST00000606369 3583 ntTSL 2 BASIC8.49□□□□□ -1.052e-9■□□□□ 11
LSM11P83369 IST1-208ENST00000535424 4082 ntTSL 5 BASIC7.68□□□□□ -1.182e-9■□□□□ 11
LSM11P83369 CHRD-211ENST00000464833 1340 ntTSL 524.49■■□□□ 1.519e-9■□□□□ 11
LSM11P83369 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.87■□□□□ 0.131e-6■□□□□ 10.9
LSM11P83369 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.021e-6■□□□□ 10.9
LSM11P83369 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.58□□□□□ -0.071e-6■□□□□ 10.9
LSM11P83369 TMUB2-206ENST00000587326 1839 ntTSL 1 (best)13.93□□□□□ -0.181e-6■□□□□ 10.9
LSM11P83369 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.34□□□□□ -0.271e-6■□□□□ 10.9
Retrieved 100 of 11,495 protein–RNA pairs in 69.6 ms