RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 NISCHQ9Y2I1 1504 aa28.47■■■□□ 2.15
CCNF-201ENST00000293968 SHROOM4Q9ULL8 1493 aa25.47■■□□□ 1.67
CCNF-201ENST00000293968 SUPT5HO00267 1087 aaKnown RBP25.27■■□□□ 1.64
CCNF-201ENST00000293968 DCAF8L2P0C7V8 631 aa24.68■■□□□ 1.54
CCNF-201ENST00000293968 PCGF6Q9BYE7 350 aa24.41■■□□□ 1.5
CCNF-201ENST00000293968 HRCP23327 699 aa24.37■■□□□ 1.49
CCNF-201ENST00000293968 CHIC1Q5VXU3 224 aa24.34■■□□□ 1.49
CCNF-201ENST00000293968 MYO15BQ96JP2 1530 aa24.19■■□□□ 1.46
CCNF-201ENST00000293968 PPARGC1BQ86YN6 1023 aaKnown RBP24.11■■□□□ 1.45
CCNF-201ENST00000293968 ZCCHC6Q5VYS8 1495 aaKnown RBP24.07■■□□□ 1.44
CCNF-201ENST00000293968 LOC105371045A0A1W2PR82 267 aa23.93■■□□□ 1.42
CCNF-201ENST00000293968 CCDC180Q9P1Z9 1646 aa23.6■■□□□ 1.37
CCNF-201ENST00000293968 EHMT2Q96KQ7 1210 aa23.56■■□□□ 1.36
CCNF-201ENST00000293968 TRIM26Q12899 539 aaPredicted RBP23.53■■□□□ 1.36
CCNF-201ENST00000293968 FAM9AQ8IZU1 332 aaPredicted RBP23.48■■□□□ 1.35
CCNF-201ENST00000293968 DCAF1Q9Y4B6 1507 aa23.45■■□□□ 1.35
CCNF-201ENST00000293968 TRIM41Q8WV44 630 aa23.31■■□□□ 1.32
CCNF-201ENST00000293968 ZEB1P37275 1124 aaPredicted RBP23.16■■□□□ 1.3
CCNF-201ENST00000293968 TTBK1Q5TCY1 1321 aaPredicted RBP22.86■■□□□ 1.25
CCNF-201ENST00000293968 RSF1Q96T23 1441 aaPredicted RBP22.86■■□□□ 1.25
CCNF-201ENST00000293968 SCAF1Q9H7N4 1312 aaKnown RBP22.82■■□□□ 1.24
CCNF-201ENST00000293968 SCRIBQ14160 1630 aa22.82■■□□□ 1.24
CCNF-201ENST00000293968 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.79■■□□□ 1.24
CCNF-201ENST00000293968 CCER1Q8TC90 406 aaPredicted RBP22.79■■□□□ 1.24
CCNF-201ENST00000293968 PELP1Q8IZL8 1130 aaKnown RBP22.76■■□□□ 1.23
CCNF-201ENST00000293968 ABCC9O60706 1549 aa22.75■■□□□ 1.23
CCNF-201ENST00000293968 RB1CC1Q8TDY2 1594 aa22.65■■□□□ 1.22
CCNF-201ENST00000293968 NEUROD1Q13562 356 aa22.45■■□□□ 1.18
CCNF-201ENST00000293968 DIEXFQ68CQ4 756 aaKnown RBP22.44■■□□□ 1.18
CCNF-201ENST00000293968 ACIN1Q9UKV3 1341 aaKnown RBP22.44■■□□□ 1.18
CCNF-201ENST00000293968 CECR2Q9BXF3 1484 aa22.43■■□□□ 1.18
CCNF-201ENST00000293968 CENPBP07199 599 aaPredicted RBP22.4■■□□□ 1.18
CCNF-201ENST00000293968 GTF3C3Q9Y5Q9 886 aa22.37■■□□□ 1.17
CCNF-201ENST00000293968 YTHDC1Q96MU7 727 aaKnown RBP22.32■■□□□ 1.16
CCNF-201ENST00000293968 UBTFP17480 764 aaKnown RBP22.3■■□□□ 1.16
CCNF-201ENST00000293968 MROH2BQ7Z745 1585 aa22.28■■□□□ 1.16
CCNF-201ENST00000293968 WIZO95785 1651 aa22.15■■□□□ 1.14
CCNF-201ENST00000293968 HNRNPUL2Q1KMD3 747 aaKnown RBP22.11■■□□□ 1.13
CCNF-201ENST00000293968 RANGAP1P46060 587 aaPredicted RBP22.1■■□□□ 1.13
CCNF-201ENST00000293968 ZNF316A6NFI3 1004 aaPredicted RBP22.05■■□□□ 1.12
CCNF-201ENST00000293968 CEP162Q5TB80 1403 aa22.03■■□□□ 1.12
CCNF-201ENST00000293968 ABCC8Q09428 1581 aa22.01■■□□□ 1.11
CCNF-201ENST00000293968 CCDC88BA6NC98 1476 aa21.99■■□□□ 1.11
CCNF-201ENST00000293968 CSRNP3Q8WYN3 585 aa21.99■■□□□ 1.11
CCNF-201ENST00000293968 SOGA1O94964 1423 aa21.96■■□□□ 1.11
CCNF-201ENST00000293968 NACADO15069 1562 aa21.96■■□□□ 1.11
CCNF-201ENST00000293968 APLP2Q06481 763 aa21.93■■□□□ 1.1
CCNF-201ENST00000293968 MIER1Q8N108 512 aa21.88■■□□□ 1.09
CCNF-201ENST00000293968 TNIKQ9UKE5 1360 aa21.85■■□□□ 1.09
CCNF-201ENST00000293968 BAZ1AQ9NRL2 1556 aaPredicted RBP21.84■■□□□ 1.09
CCNF-201ENST00000293968 WRNQ14191 1432 aaPredicted RBP eCLIP21.81■■□□□ 1.08
CCNF-201ENST00000293968 RUSC2Q8N2Y8 1516 aa21.8■■□□□ 1.08
CCNF-201ENST00000293968 PABPN1Q86U42 306 aaKnown RBP eCLIP21.77■■□□□ 1.08
CCNF-201ENST00000293968 MYT1Q01538 1121 aa21.7■■□□□ 1.06
CCNF-201ENST00000293968 TOP2AP11388 1531 aaKnown RBP21.67■■□□□ 1.06
CCNF-201ENST00000293968 GOLGA3Q08378 1498 aa21.67■■□□□ 1.06
CCNF-201ENST00000293968 EIF4G1Q04637 1599 aaKnown RBP21.63■■□□□ 1.05
CCNF-201ENST00000293968 EEA1Q15075 1411 aa21.62■■□□□ 1.05
CCNF-201ENST00000293968 CLIP1P30622 1438 aa21.59■■□□□ 1.05
CCNF-201ENST00000293968 SMARCA2P51531 1590 aa21.59■■□□□ 1.05
CCNF-201ENST00000293968 SMARCA4P51532 1647 aa21.54■■□□□ 1.04
CCNF-201ENST00000293968 ITGAEP38570 1179 aa21.52■■□□□ 1.04
CCNF-201ENST00000293968 CEP164Q9UPV0 1460 aa21.46■■□□□ 1.03
CCNF-201ENST00000293968 VPS8Q8N3P4 1428 aa21.39■■□□□ 1.02
CCNF-201ENST00000293968 RAPGEF2Q9Y4G8 1499 aa21.33■■□□□ 1.01
CCNF-201ENST00000293968 SUPT16HQ9Y5B9 1047 aaKnown RBP21.28■■□□□ 1
CCNF-201ENST00000293968 KANK4Q5T7N3 995 aaPredicted RBP21.28■■□□□ 1
CCNF-201ENST00000293968 BCANQ96GW7 911 aa21.27■■□□□ 1
CCNF-201ENST00000293968 SYNJ1O43426 1573 aa21.25■□□□□ 0.99
CCNF-201ENST00000293968 DHX57Q6P158 1386 aaKnown RBP21.21■□□□□ 0.99
CCNF-201ENST00000293968 ATP1B4Q9UN42 357 aaPredicted RBP21.18■□□□□ 0.98
CCNF-201ENST00000293968 KIF21BO75037 1637 aa21.16■□□□□ 0.98
CCNF-201ENST00000293968 KCNH8Q96L42 1107 aa21.14■□□□□ 0.97
CCNF-201ENST00000293968 BAZ1BQ9UIG0 1483 aaKnown RBP21.13■□□□□ 0.97
CCNF-201ENST00000293968 CLSPNQ9HAW4 1339 aa21.12■□□□□ 0.97
CCNF-201ENST00000293968 DDX10Q13206 875 aaKnown RBP21.07■□□□□ 0.96
CCNF-201ENST00000293968 FAM50AQ14320 339 aaKnown RBP21.06■□□□□ 0.96
CCNF-201ENST00000293968 HIRIP3Q9BW71 556 aaPredicted RBP21.04■□□□□ 0.96
CCNF-201ENST00000293968 UNC13AQ9UPW8 1703 aa21.03■□□□□ 0.96
CCNF-201ENST00000293968 TSHZ2Q9NRE2 1034 aa21.03■□□□□ 0.96
CCNF-201ENST00000293968 FKBP8Q14318 412 aa21.03■□□□□ 0.96
CCNF-201ENST00000293968 ATAD2BQ9ULI0 1458 aa21.02■□□□□ 0.96
CCNF-201ENST00000293968 CCNB3Q8WWL7 1395 aa20.99■□□□□ 0.95
CCNF-201ENST00000293968 NEFLP07196 543 aa20.99■□□□□ 0.95
CCNF-201ENST00000293968 SIN3AQ96ST3 1273 aa20.97■□□□□ 0.95
CCNF-201ENST00000293968 P3H3Q8IVL6 736 aa20.97■□□□□ 0.95
CCNF-201ENST00000293968 ARAP1Q96P48 1450 aa20.95■□□□□ 0.94
CCNF-201ENST00000293968 TRIM52Q96A61 297 aa20.93■□□□□ 0.94
CCNF-201ENST00000293968 RAB3GAP2Q9H2M9 1393 aa20.91■□□□□ 0.94
CCNF-201ENST00000293968 BICRAQ9NZM4 1560 aa20.9■□□□□ 0.94
CCNF-201ENST00000293968 KIF27Q86VH2 1401 aa20.88■□□□□ 0.93
CCNF-201ENST00000293968 ANP32EQ9BTT0 268 aa20.87■□□□□ 0.93
CCNF-201ENST00000293968 PRXQ9BXM0 1461 aa20.84■□□□□ 0.93
CCNF-201ENST00000293968 RRBP1Q9P2E9 1410 aaKnown RBP20.83■□□□□ 0.93
CCNF-201ENST00000293968 ANP32CO43423 234 aa20.82■□□□□ 0.92
CCNF-201ENST00000293968 TOP2BQ02880 1626 aa20.82■□□□□ 0.92
CCNF-201ENST00000293968 PEG3Q9GZU2 1588 aa20.81■□□□□ 0.92
CCNF-201ENST00000293968 ERICH3Q5RHP9 1530 aa20.76■□□□□ 0.91
CCNF-201ENST00000293968 SETD5Q9C0A6 1442 aa20.74■□□□□ 0.91
CCNF-201ENST00000293968 ARHGAP35Q9NRY4 1499 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms